Cchi003661.1
Basic Information
- Insect
- Cotesia chilonis
- Gene Symbol
- lrrfip2
- Assembly
- None
- Location
- scaffold7:1418543-1420560[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.3e-94 1.3e-89 300.1 31.9 3 251 31 283 28 284 0.96 2 4 3.8e-12 5.3e-08 32.2 0.9 275 300 284 309 281 309 0.94 3 4 0.0033 46 2.8 2.9 121 172 308 359 306 364 0.90 4 4 0.028 3.9e+02 -0.2 6.3 193 238 339 383 325 384 0.61
Sequence Information
- Coding Sequence
- ATGGAGTCAGCAATAACTGGTCGAAGGCGTGCTGCTAGTCGGCATTCTGCTGAAGATCAAGCTCTCGATCAAATAGCAAAAGAGGCTGGAGAAAGATTAGCAGCACGAAGACAAGCCAGGGCCGAAGCGCGAGAAATCCGAATGAGAGAATTAGAAAAACAGCAAAAAGAAGCTGAACAAACCGCTGATCGTGTTTACGATATGTGTAATGCTGACGGAACAAGAACTTTGAGGGTAACACCAGATCCTATAAGGGCTTCACGCTTATTAACAAATTCAAATAATTTTCAGTCAAGTCGTAGGTCTTCCGAAGATTCCTTAGAGGATGCTGGTCAAAGTAGAGATTTAAGATTAGAGCTTAAAGAGCTTGAAGAAAAATTTAGAAAAGCAATGATTGCTAATGCTCAACTGGATAATGAAAAATCGTCTTACGTTTATCAAGTGGATTTACTTAAAGATCAATTAGAAGAATCGGAAGAATCGGCCGCTACATTGCGACGAGAGCTCAGGGAAAAAACTAGTGAGGCTAAATTATTGCAACGTGATTGCCAACGGTTGAAAGAGGATTTTGAAATGTGTAAAACATTATTGGAGGAACGAGATAGGCTTATAGAAGAAAATGGATTGGTAATTATTGAAGATGAGGTCAGTGATGACGAAGAAGCAGAAACAACTAATGGATTTGTGAATCGTAAAAAAAAAGTACTAGTCAGTACAGAAGCTGCTGAATTGTTACAAAATGCTGGTGAAGGATCTCTAGATGTTCGGTTGAAAAAGTTTGGAGCAGAGAAAAAAGAATTACAAGATGAAATCCGACATCTAAGACTAGAATTGGAAGAAGCCAAGAAAGACGTCCAAAGGGAAGCAAATAAATTGTTGGCAGATTACAAATTCAAGTTACAAAAAGCCGAACAAGATATGTCGACGTTACAAGCAACTGTTGCGAGATTAGAGAGTCAAGTTATTCGTTACAAGTCAGCGGCCGAAACTTCTGAGAAAGCCGAAGACGACTTGAAGGTTGAGAAGCGGAAATTACAGAGAGAAGTAAGAGAATCGCAGAGTCGTGTTGAAGAGTTAGAAACAACAAATTCGCATTTACAAAGACGATTAGATAAATTGATAAAAGCAAAATCGGCTCTTTTGAAAGAGCTCTGA
- Protein Sequence
- MESAITGRRRAASRHSAEDQALDQIAKEAGERLAARRQARAEAREIRMRELEKQQKEAEQTADRVYDMCNADGTRTLRVTPDPIRASRLLTNSNNFQSSRRSSEDSLEDAGQSRDLRLELKELEEKFRKAMIANAQLDNEKSSYVYQVDLLKDQLEESEESAATLRRELREKTSEAKLLQRDCQRLKEDFEMCKTLLEERDRLIEENGLVIIEDEVSDDEEAETTNGFVNRKKKVLVSTEAAELLQNAGEGSLDVRLKKFGAEKKELQDEIRHLRLELEEAKKDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAETSEKAEDDLKVEKRKLQREVRESQSRVEELETTNSHLQRRLDKLIKAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01003522;
- 80% Identity
- -