Cchi006530.1
Basic Information
- Insect
- Cotesia chilonis
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold16:1300458-1304182[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.6e-05 0.024 14.0 0.1 1 39 275 308 275 312 0.85 2 4 5.3e-12 2.7e-09 36.2 0.1 2 39 324 361 323 364 0.94 3 4 7.1e-08 3.7e-05 23.0 0.0 2 23 379 400 378 402 0.93 4 4 1.6e-08 8.1e-06 25.1 0.1 19 42 403 427 403 428 0.96
Sequence Information
- Coding Sequence
- TCTTTGCTGAAAACGGCGGATCAATTGAAAATAAAAGGGCTGTGCGAAGTGCCAGAGAGCAAGGAAGCGCCAGCGACAGTGAGTTTGAGCTCGTCACCGCGAGAACCAGGAGGTGCGTCGAGGTTCAATTACACGAAGCTGAAGAGGCATCACCCGAAGTACAAGCGCCAGCGAACGAGTCTAGGAGCCGGAGGAGGATCTGCTGGAGATTCCGCTGCTGGGAGGCCCACGAGCACCGACAGGTACAAAGAGGAGGAGAACGAGAACAGCAGCAAGGCCGGATTCGGCTGCGAAAACGACAAAGAGAATCACCGGGGTGACTGGCAGACGGAGGATGAGGAGTGCGGAGGAGACGCAGCAGTAATCCTGGAATCCTGCCAGCGAGACACCAACAACGGTAACGGCACAAACAACAATAACGGCTTAGGACACTACGGGCACCATCCGGACCCAGGCGAGGTCGACTTGCCTCCGGAGACCCAGCCCACGCCGCCGAGCGCCACGCTCGTTGGCACCACCATCACACATCTCAGGGACACCGACAACCATTCTACAGATATACAAAATTGTGATAACGTAAAAATAAAATTCGAAACCCTTCACACGATGGACTCATCGGACACCATAGACATAGACAGCCACATGTCGGATTGCGCGAGTGTGAGCTCAAAGCACGCAGCCGAGGGTGACAATATGATGATGATAACGCCCGAACTGCTGGGCCTGATGCCCTCGGGCAGTTCAGTCCACTCCAACTCGGGGGAGAACAATTCTAGGAGTCACTCCGGGGGTTCGGGCCACCACCACGGCTCCAAGTCTTGGACCCAGGAGGACATGGACGCCGCGCTGGACGCTCTGAGAAACCACGACATGACGACATTCGGAATTCCCTCGACAACTCTCTGGCAGCGCGCTCACAGATTAGGGATCGACACTCCAAAGAAAGACGGGCCGACCAAGTCCTGGAGCGACGAGAGTCTCAACAGCGCCCTGGAGGCGCTAAGGACGGGAACAATTTCGGCGAACAAAGCGTCGAAGGCTTTCGGAATTCCCTCGAGCACTCTCTATAAAATAGCCAGGCGGGAAGGGATAAGATTGGCTGCGCCATTCAACGCCAGTCCCACCACCTGGTCGCCCGCGGACCTGGACAGGGCTCTGGAAGCTATCAGGTCAGGACAGACCTCCGTCCAGAGAGCTTCCACCGATATTAACCAAGCAGCGATTCATTATAATCTGCCATACTCATCTCTATACGGGCGATTCAAGCGCGGAAAATACGAAGAGCCAGTTGTGACGGAGCTTTCTCAGGACGGGACGAACCCTCACTTCCACCAGAGCCCGCACCACAACCACTCTTCCTCGCTCCCGGATCAGTTGCCCTACCAGGGCAGCTGA
- Protein Sequence
- SLLKTADQLKIKGLCEVPESKEAPATVSLSSSPREPGGASRFNYTKLKRHHPKYKRQRTSLGAGGGSAGDSAAGRPTSTDRYKEEENENSSKAGFGCENDKENHRGDWQTEDEECGGDAAVILESCQRDTNNGNGTNNNNGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDNHSTDIQNCDNVKIKFETLHTMDSSDTIDIDSHMSDCASVSSKHAAEGDNMMMITPELLGLMPSGSSVHSNSGENNSRSHSGGSGHHHGSKSWTQEDMDAALDALRNHDMTTFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTDINQAAIHYNLPYSSLYGRFKRGKYEEPVVTELSQDGTNPHFHQSPHHNHSSSLPDQLPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00381751;
- 90% Identity
- iTF_00381751;
- 80% Identity
- -