Basic Information

Insect: Cosmorhoe ocellata
Gene Symbol: -
Assembly: GCA_963675405.1
Location: OY776259.1:776451-778658[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.001 15 6.5 0.0 13 52 183 222 176 223 0.84

2 11 0.0011 16 6.4 0.1 23 47 221 244 217 252 0.84

3 11 0.2 2.9e+03 -0.8 0.1 18 31 244 257 242 273 0.79

4 11 0.0097 1.4e+02 3.4 0.0 22 52 276 306 269 308 0.84

5 11 0.0031 46 4.9 0.1 21 45 359 383 356 390 0.86

6 11 3.6e-05 0.54 11.1 0.0 21 52 387 418 382 420 0.87

7 11 0.062 9.2e+02 0.8 0.1 22 44 416 438 413 442 0.81

8 11 0.0022 32 5.4 0.0 21 43 443 465 435 471 0.86

9 11 0.001 15 6.5 0.1 21 52 472 503 468 503 0.88

10 11 0.0017 25 5.8 0.0 22 52 501 531 498 533 0.88

11 11 0.052 7.8e+02 1.0 0.0 23 49 530 556 526 560 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.001	15	6.5	0.0	13	52	183	222	176	223	0.84
2	11	0.0011	16	6.4	0.1	23	47	221	244	217	252	0.84
3	11	0.2	2.9e+03	-0.8	0.1	18	31	244	257	242	273	0.79
4	11	0.0097	1.4e+02	3.4	0.0	22	52	276	306	269	308	0.84
5	11	0.0031	46	4.9	0.1	21	45	359	383	356	390	0.86
6	11	3.6e-05	0.54	11.1	0.0	21	52	387	418	382	420	0.87
7	11	0.062	9.2e+02	0.8	0.1	22	44	416	438	413	442	0.81
8	11	0.0022	32	5.4	0.0	21	43	443	465	435	471	0.86
9	11	0.001	15	6.5	0.1	21	52	472	503	468	503	0.88
10	11	0.0017	25	5.8	0.0	22	52	501	531	498	533	0.88
11	11	0.052	7.8e+02	1.0	0.0	23	49	530	556	526	560	0.86

Sequence Information

Coding Sequence: ATGTCTTCGGTGTGTAGAGTGTGTTTGGGCAGCAATATGAAAATGTACCACATTGAAAACACCTATCTTCAAAAGACATTTGAGAAACTCACTGGAAGCATGCTTAGCTCAGCGGACGGCAGGCCCACTGAAATATGCTGCATTTGCAACTCACAGCTACAGAAGTGCCTTAAGTTCTTCAACATGTGCCAGAAATCAGAAAAAATCCTCAGAGAGATTAATCTCAGTGATCTGGAGATAACACAGCAGATGCTTCATGAGCATAGCTTGGGGTGGATACACAACTTGTCCAAGACTCTTTTAAAGCCCATATCTATAATCGATGACTCAAACTATGAAGGTAATAATAATGCAGCTGTGAAAAAAGAGGCTCTTGAAGAAGTTTTTATTGATGTTGATTCTAGACTATTTGTTGAAGATATAAAAGTTGGCATCAGTACTGTTTATGTAAAAAGAGAAAAAGTAAAAGAAGCAGGTGAAAGCGAGACTGATGATATTTTGTCCGACTCATGCAATGATTGCATTACAAAAACAGAAACTAAAATAGAGAAAAATAAGAAAGGGCACGCTGAAGAAATAACATATACCTGTCAAATTtgtaataaaacattcagtCAAAAACATGGTTTAAAAATACACATGGTTATTCACTCTGGAGCTAAACCATATACTTGTGAAGTGTGTAATAAGTCATTCGCTCAAGGCAGTACCTTGAGGAACCACATGAGGAGACATACGGGAGAAAAGCCGTATACTTGCAAAAGATGTAACAGATCATTTGGTCGTAAATACACTTTAGATCTTCACATGAGAACACATACGGGAGAAAACTCGTATACATGCAATATCTGTAATAAAGCAATGactacaaaaggagggctaaTAAGGCACATGGCTATtcacactggacaaaagccatataTTTGTGAAGTTTGCAAAAAGCCATTTGCTGGACAAAGTGATTTAATGCAACACTCTGTTATCCACACAGGGTATAAGCCATTTATATGCAATGTATGCGGaaaatcattttataaaaacactcATTTGAAACAGCACATGTTGTATCACACAGCGGAAAAGCCATATAGCTGTAGTATATGTAACAAagcattttatcaaaatgttcAACTGAAAGTACATATGCGAACTCACACTGGTGAGAAACCACATACTTGCAACATTTGCAATAACTCATTTAGTCAAAGTGGTGCATTGTCAAGTCACATGAAAATACACACTGAAGAAAAACCATTTACTTGCAATACatgtaataaatcatttaaaCGCAAGACATGTTTGAAAATTCACATTCGAACTCACACTGGCGAGAAGCCTTTTACTTGCAATATATGTGATAGATCATTCTCTGAAAAAGGTAAATTAAAACGGCATAATATGCAAGTGCACACTGGAGAAAGACCATATACTTGCAGTGTGTGCAACAGATCATTTAATGATAGCAGTAGTTTGAATTATCACATGGGATTGCAtactggacaaaagccatataCATGCAGCGTATGTGGTAAATCAtttactcaaaataaaattttaactaAGCATATGAGAATACACACAGATGGAAAGCCATATATTTGTAATATATGTGGCAAATCATACACTCAAAATAGTAGTTTGTCAACACATATCAAGAAAAATCACAGCAGTCAAAAGCCTTTTTAG
Protein Sequence: MSSVCRVCLGSNMKMYHIENTYLQKTFEKLTGSMLSSADGRPTEICCICNSQLQKCLKFFNMCQKSEKILREINLSDLEITQQMLHEHSLGWIHNLSKTLLKPISIIDDSNYEGNNNAAVKKEALEEVFIDVDSRLFVEDIKVGISTVYVKREKVKEAGESETDDILSDSCNDCITKTETKIEKNKKGHAEEITYTCQICNKTFSQKHGLKIHMVIHSGAKPYTCEVCNKSFAQGSTLRNHMRRHTGEKPYTCKRCNRSFGRKYTLDLHMRTHTGENSYTCNICNKAMTTKGGLIRHMAIHTGQKPYICEVCKKPFAGQSDLMQHSVIHTGYKPFICNVCGKSFYKNTHLKQHMLYHTAEKPYSCSICNKAFYQNVQLKVHMRTHTGEKPHTCNICNNSFSQSGALSSHMKIHTEEKPFTCNTCNKSFKRKTCLKIHIRTHTGEKPFTCNICDRSFSEKGKLKRHNMQVHTGERPYTCSVCNRSFNDSSSLNYHMGLHTGQKPYTCSVCGKSFTQNKILTKHMRIHTDGKPYICNICGKSYTQNSSLSTHIKKNHSSQKPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00377300;
90% Identity: iTF_00377300;
80% Identity: iTF_00377300;