Csor015624.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- zfh1_4
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000401.1:321016-330633[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00083 22 6.8 0.0 25 48 144 167 135 169 0.84 2 7 0.00056 15 7.3 0.1 21 48 257 284 253 286 0.90 3 7 0.5 1.3e+04 -2.1 0.0 27 46 292 311 291 319 0.76 4 7 0.075 1.9e+03 0.5 0.1 16 40 309 333 302 340 0.77 5 7 0.086 2.2e+03 0.3 0.1 18 45 338 366 335 375 0.77 6 7 0.0098 2.6e+02 3.3 0.1 18 43 367 392 363 398 0.89 7 7 2.1e-07 0.0054 18.3 0.3 22 49 399 426 394 431 0.84
Sequence Information
- Coding Sequence
- ATGCTATTATTTATGATCGTGCCTAGAGTGTTGATGCTGGAGTTTCTTAATGCTTTCTCAATGGTTATGTTGGATAGAAGGCATGACAGACTATCACCTTGTCGTAAACCAGAATGGAAATACCAAAATACACTTTTTTACAGAGATACATCCACCATATCTAAAGGACCACACCTATTTGACAATATAAACGAAGAACAAGACTTATGCGATGATgccaatttaaaatttgttgccAATTCCATTGAAAACGACGAAGATGAGATGTGTACATCGGAAGATTTAGATCTGGAACTAGAAAATACTGTCCCATATGTCAATGTAAAAAAAGATGTtatgataaataacaaaattgtaaaaacaaatgCAGTTGGTGCAAATGGGGCTAAGCAAGTGAGCGAAATAAGTGATGTCGACGAGGAATATGGCTTTGAATGTCCGATATGTTCAAATGTGTTCAGTGCAGAACGCGATATATCCCAACACGTTAAACGTAGCCACTCGAATGTCAACACAGATGATGTATTTTTTGGAGTGAAAGATTTAGAATCGAAAGCAGAGTTGAAAATGCCACCGAAGAAAAAACCGCGGGTTTCACGGAGATTCACCGTGAAGCACATGATGAATAAACCTCAACAGAAAATCGACCAAGAACTAGTGAACAAAGCCAAATTGGTGGTTGATGGTCGAGTCTTCTACAAATGTAAGGAATGTGGGAAAAGTCTTCATTCTATGTACACATATGTTTGGCATATGCGAATTCACACCGGTGAACGTCCGTATGTATGTGACTTGTGCGGTAAACAATTTCGGGTATCTCAAGGATTGGTGAGACACTTGAAAGAAACTCACGAACgaataaaaaattttgaatgTGATATTTGTGGCCGATACTTTTCTACCAAAAGAAACGTTGAGGAACACAGACGAATCCATACCAACGAACGTCCGTATGTTTGCGCCCTTTGCGGAAAATCTTTTAAACAGAAAGCGTCTCTTTTTGTTCATAACAGATCTCACAGTACCGAGTTTCCTTTTAATTGTACGTATTGTCCTCAGAAGTTTCGGACTAAGCAATCTTTAATAACGCACATTACCAGACATACGGGGGAAAAACCTTTCCCATGCGATGTTTGCGGTCGAAGGTTTAGAATAAAGTACGAGCTGAAGAGACACAAATTGGTCCATTCGGAAGACAAACCTTTTAGTTGTAAAATGTGCGGTCAGACGTTTAGGCAGAAAAGGTATTTGCGGAATCACTTGAAATTAAATCATCATATAGCTAATCCAAATGATCTTATTGACGTGTAA
- Protein Sequence
- MLLFMIVPRVLMLEFLNAFSMVMLDRRHDRLSPCRKPEWKYQNTLFYRDTSTISKGPHLFDNINEEQDLCDDANLKFVANSIENDEDEMCTSEDLDLELENTVPYVNVKKDVMINNKIVKTNAVGANGAKQVSEISDVDEEYGFECPICSNVFSAERDISQHVKRSHSNVNTDDVFFGVKDLESKAELKMPPKKKPRVSRRFTVKHMMNKPQQKIDQELVNKAKLVVDGRVFYKCKECGKSLHSMYTYVWHMRIHTGERPYVCDLCGKQFRVSQGLVRHLKETHERIKNFECDICGRYFSTKRNVEEHRRIHTNERPYVCALCGKSFKQKASLFVHNRSHSTEFPFNCTYCPQKFRTKQSLITHITRHTGEKPFPCDVCGRRFRIKYELKRHKLVHSEDKPFSCKMCGQTFRQKRYLRNHLKLNHHIANPNDLIDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00376576;
- 90% Identity
- iTF_00376576;
- 80% Identity
- iTF_00376576;