Csor039482.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- egg_2
- Assembly
- GCA_031761425.1
- Location
- JARFXV010001463.1:31000-48422[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.63 4.7e+03 -1.2 0.0 30 53 199 222 187 234 0.75 2 2 1.2e-13 9.1e-10 39.5 0.0 4 74 492 555 489 558 0.88
Sequence Information
- Coding Sequence
- ATGGTACGATCATTGCCGCGCCCACTGAACAAAGATATGGCGATTAACGTGaacataaagaaaataatcgtATACAAGTCGGTATACTTAGCAGGTACGGTGCTGAAGGGTGTAGTCAAGAAATGGCTTGAATACTTAGTCAAACAGCCACTCTACAAACATTATGGCATCAAAATAGACTTTAGCTCATGGGGTAATAATAATGTGCAGCCGTCGACAGAGTCCGAGGTACAGTTGGTCATAGATCCCATCGAAGAGACTCCGATTCTCGACTCGGACCACCTTGTAACCCGCCAGCAAACATTGATGTGGGATGAGGTGAAAATGGTAGAGCCTTTTATGAGTAAGATAATCGTCCGTTTTCAAGATAATCGTCCGACTTACGATGGATCAACTTGGAATCAGTCTAATGTTTTGAATATGGCGCCAGatgaaATATATTATGTAACTCGAGAAAACAATCCACAAGGATCTTGGGTAAAAGCTCGTCTACAGCAGATTATTCAACCTAACACTATATTCCGTGGCCAAACTTATTCCGAAATTCATTACAGGCTTATTGAACTGAAACAACAAAAAGAAAGAGTCTTAAGCGGCAAACATATCGCTTATATATACCCGTGTAAGTCGCGTCTCAGTGTTGGAACTAGAGttatatcaatatttaaatCTGAAATTACTAATTCTCCAAATGTCAAACGACCGAGAACTGATCCTTATTATGCCGGAGTTGTTGGAGAACACCCAGtagaatcaaataaatatagatatttaattttctttgataTTGGTTATGCTCAGTATGTCCCACATTTTGGTATACATTTAGTGTTAGATTCCAGCAAAAATGTGTGGGAGGATATGCCTGAAGATTCAAGACCATTCATAAAGAAATATCTTGAAAGTCAAGACAGACCCATGGTGAAAATGACCCCTAATCAAACTGTTAGAGTTGAATACAATGGAAAGTGGTGGCTATGCTCCATAAAAGCGATTGATTGCTCTTTAGTACAAGTGTGTTTTGATGCCCTTAAAAGATGGGAATGGATATATAGAGGTTCTACAAGATTAAGTCCAATGTTCAGAGAGGAACAGGCTGCTACCAATAGACACACAGGACTAAGAACTCCTAGAAAATTGGCTATTaATGAATCAGCTACAGTTGTGCAGTATACAAGAAACAAAGATTTTGTTCAACAATCACCAGTTAAAGAAGAAGAACCAAAAAGTGTAACGCGAGCTGTGGCCAGGAAAAGTACCACTAAACCAAATACTTCTAATCAACCTGCTCCAAATATTGTTCCATTTTTACCTCCTGTTAATAACACACCAGCCAATGTGACAGGACCCACTAGTAAAATTATGTATTTTACCCCAAGAGATCAGCAAGTAATCAAAAGGGAATATAAACATCATGCATGCAGTGCATCTTGTAAATCTTTTCTCACTCACAATTTCACTAAACTCAAAGGCCACAATCCATTGTCTAAGCCTCTACTCTGTGGTTGGGCTAGGATGACTCTTAAAGATAGGGGCAGGAAGCTAATCATATATAAGGCCCCTTGTGGGAGAATGATCAGGGATCTCAGTgagGTCCATTATTATTTAAGAATTACTGAAAGTGAAATGACTGTAGACTTATTTGATTTTAATCATATGGTTCGATGCTTAGCTGAGTTTAGCGTGGAATGTGCTCCAGATCCCAAAGATTTATCCAAAGgtctTGAACAAGTTCCTATACCAGTTATAAACGGTCTGAATAATGATATGTTAGATTTTTGCAACTATTCTACAAAAAGGGTTCCTATGGAAGGGGTCCATATGAATTTAGACACGGAATTTTTATGTGGATGCGATTGTGATGATGATTGTGTGGACAAACTGAAATGTTCATGTTGGAAATTAACCTTGGAAGGTATAAAATATTTAGGGAAAGATATTGATCCGATATCAGTTGGTTATATCTATAGAAGGTTACAAGATCAAGTTATTACTGGAATTTACGAGTGTAACTCAAAATGTAAATGTACCTCAACTTGCTTAAACCGAGTAGCTCAAAATCCCATGTCATTGAAACTCCAAGTATTCAAAACGCCTAATAAAGGTTGGGGCATAAGATGTTTAAATGATATTCCACAGGGTACCTTTATTTGCATTTACGCTGGTACATTACACACTGAACAAATGGCAAACGAGgaTGGTATGCAGTATGGGGATGAATACTTTGCTGAATTGGATTACATAGAAACCGTAGAGAAATATAAAGAAGATTACGAAGAGGAGGTAATAGAAGATGATGATTTCGAAAAGGAAAAAACTCCACCTCCAGTGGAAgttaaagaacaaaaaggacaaaaagCTGCTCAGGCCAAAAAAAGAAACACCTACATGGAGGATAACGATTTTACTCCAAGTCATCCAGTACAGAGACCCTCTGGATCTGACGAGGGAATACGGTCTAGGCTAAGAAAAAGAAGGGATGATGACGATAAAAAGGAACCTGAagtgaaaataaaacaagaactgCCAGATCGGGATATTAAAACTATCGTGGAACATATCGCTGACAATATTGATACAGTTACTATCAGTGATGAAGAAGATGAGGGTCGAGAAGTACTCAGCTTCAATCCTAAAGCAAATACTGATATAGATGACCGAACATCCAAGTACCTATCAGTTAGGGAACTGTTTGGTTCAGATGAAAaggataatatttatattatggatGCAAAGAACGCTGGAAATATTGGCAGGTTTTTAAATCATTCATGTTCTCCGAATGTTTTCGTTCAGAACGTTTTTGTGGATACACACGACGTACGATTCCCCTGGGtagcatttttttcttctcaaTTTATCAGGGCAGGTACTGAGTTGACATGGAACTACAATTACGATATAGGAAGTGTCCCTGGAAGAGTGCTCTATTGCAACTGTGCGTCTCTGGAGTGTAAAGGaagattattataa
- Protein Sequence
- MVRSLPRPLNKDMAINVNIKKIIVYKSVYLAGTVLKGVVKKWLEYLVKQPLYKHYGIKIDFSSWGNNNVQPSTESEVQLVIDPIEETPILDSDHLVTRQQTLMWDEVKMVEPFMSKIIVRFQDNRPTYDGSTWNQSNVLNMAPDEIYYVTRENNPQGSWVKARLQQIIQPNTIFRGQTYSEIHYRLIELKQQKERVLSGKHIAYIYPCKSRLSVGTRVISIFKSEITNSPNVKRPRTDPYYAGVVGEHPVESNKYRYLIFFDIGYAQYVPHFGIHLVLDSSKNVWEDMPEDSRPFIKKYLESQDRPMVKMTPNQTVRVEYNGKWWLCSIKAIDCSLVQVCFDALKRWEWIYRGSTRLSPMFREEQAATNRHTGLRTPRKLAINESATVVQYTRNKDFVQQSPVKEEEPKSVTRAVARKSTTKPNTSNQPAPNIVPFLPPVNNTPANVTGPTSKIMYFTPRDQQVIKREYKHHACSASCKSFLTHNFTKLKGHNPLSKPLLCGWARMTLKDRGRKLIIYKAPCGRMIRDLSEVHYYLRITESEMTVDLFDFNHMVRCLAEFSVECAPDPKDLSKGLEQVPIPVINGLNNDMLDFCNYSTKRVPMEGVHMNLDTEFLCGCDCDDDCVDKLKCSCWKLTLEGIKYLGKDIDPISVGYIYRRLQDQVITGIYECNSKCKCTSTCLNRVAQNPMSLKLQVFKTPNKGWGIRCLNDIPQGTFICIYAGTLHTEQMANEDGMQYGDEYFAELDYIETVEKYKEDYEEEVIEDDDFEKEKTPPPVEVKEQKGQKAAQAKKRNTYMEDNDFTPSHPVQRPSGSDEGIRSRLRKRRDDDDKKEPEVKIKQELPDRDIKTIVEHIADNIDTVTISDEEDEGREVLSFNPKANTDIDDRTSKYLSVRELFGSDEKDNIYIMDAKNAGNIGRFLNHSCSPNVFVQNVFVDTHDVRFPWVAFFSSQFIRAGTELTWNYNYDIGSVPGRVLYCNCASLECKGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00376342;
- 90% Identity
- iTF_00376342;
- 80% Identity
- -