Csor016791.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- PHF20_1
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000440.1:247341-256343[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6 1.2e+04 -2.5 0.0 45 59 151 170 150 205 0.58 2 3 6.9e-21 5.1e-17 62.7 0.0 8 70 425 486 419 492 0.94 3 3 4.4 3.3e+04 -3.9 0.0 47 58 565 576 564 581 0.80
Sequence Information
- Coding Sequence
- ATGGGACGAAAGTGCAGTGTTGAAAATTGTACTTCCGATTCAACTAGGCCAGAACACGTTGGTGTAACATTTCACAAAGTTCCTCATCATTCTGATGTTCGCCCTAAATGGATATCTCTTTGTCGAATTCCAGATGATAAATCAAATGCTAAAGTCCTTTATGTATGCTCTCGACACTTCCTAAGAGCTGATTTTTGTAGTTTTAAggggaaaaaatatatgctaaGACAAGGAGTTTTGCCGAGTGTATTTCCTTGGGATAAATCTAAACTAGAAGCTATAAAGGCAGAGGCATCTACAAAGAAAGAGGTAGATAATTCAAAAAAGAAGTATCATGTAAAAGAGAAAAGAATTAGAGAGAAAACAAAAGGATCAGTTCCCATAACAAATGAAACTTTTCCTTCAAAGGAAGTTAAGTCAGAATCTGAAGAGATTAAAATTGAGTCTAACAGCATATCTGAACTAAAAACCTACATGAATCCAAAAGAGACAGATGaagttaaaactgaaattaaagAGGAAATAGATGCATTTGATCAGCATCAGAGATCCCAATCATCATCTGCAGCTAGTAGCCCTTTAAATTTTgctattaattctaaaatagAAGTACTGGACAACAATATTTGGTATACTGCAAAAATAAATGAAGTTGACTATGAAGAAAGTGAAATTCTGATTCACTTTGAAcattattcaaataaatatgATGAATGGATATCAATGACAAGTCCAAGACTAAGACCTGTTCACCCTAAACAGACTGAAAAATATGAAGAGGGTGAACGATGTATGGCAATTTGGAGTGATGCAAGAAAGTTTCCAGCCACTGTTACTAAAATATTAGATAATGaaacTGTAGAAGTGGTATTTGATGATGGTTTAGTAAAGACTGTTAAAATTCATAAGATGTCCAAAATTAGTAAGACTAAACCAGCACAAGCTTCGCCCTTATTTGAACCTGTAAAAAGCACAAAACAAGAACGCAGAGATAAGAAAAGAAAACTGAATGTTGCTGCTCTCTTTGGAAAGAGAAGTCGATTATCACACTCAGATGAAAAGAAGAACAAGACATCATCAGTTACATTGTCATCTGACGAATTAATAAGTTCTCCAGTGGAACATACAGAATCAAAAGGAGTTATGCCAGTGGCAAATTCTCCAATACAGTCAACAGAACAGTGGCTTCCAAAatttGAAGATGGAAAACCGGTTGGTGTTGATTCAACAATAGATGGTAACGACGGCGTTCGTAAATCTGTAATAGTACCAGATCCAAGAATTCCGCACGATTGGCAAAGGCATTTAGCTCAACGTAGTCATGGAACTTCAGCTGGAAAATGGGATACAGTATTTATAGGaccagatggtaaaaaatttagaaacaaAACAGAAATCAAAACGTATTTAGAACAAAATCCTAACATAGATATTACTCTGGACATATTTGACTTCAGTATTTATCGAAATGGCCATAAAAGAAAGTTAATCAAACCAAAGACGAAGTCAGATAATCAAGAAGCCAGTGAGGAATCTATAAAGGAGGAACCGCCAGTGAAAGAAGAAGtTCCAGAACCACCGGTAAACcttaaaattatctttgaaaATGACAGTTACAAATGCCCAATTGAGGGTTGTGGAAAAAATTTCCGCAGAGAAAATTTAGCATTGATGCATGTAAAGCATTATCATTctgaatatacaaaatatttggaCTCAACGCCCAATGTGGCTGACTTAGCTTATGCTCGTACAGTTGGGGAAAATCTGGATAGATCACCAGGATCAGGCAAACCTATTACACCTAAAGCTTCTGCAGATAAGACACCAGTTCTAACAAAGTTACCAAAATCCCTTCATGTGGCAACAACAGAATCCAAGACGGCAGGTAGCATGTCTCCAATTCCTGAAGCGAAAACTCGAGATGctgaaattataaaacttttGAATCAAAAAGTGTCAGATTCAGATAAAGAAATCCAACCTTTGCCATCAGGATTACCATCTAATATGTatccagatataaaattaaaggaTCTATTGAGTAAAACTGAGGAGATTCCACTCAAGGATgatataaacattaaaacattatGTGCATCTAGGCCGACTCATGGTATAAAAACCCTTTTACCTGTAAGATCTAGTCAAACATCAAATGAAAACCATGAAGAAAAAGtgaatataaaaagaaaacgtGTACCTTCTGATGGTTTAGATACTCATAAAGGTAAGTATTATAACTTTACATATACTATATCGTTGGATGCATTGTAA
- Protein Sequence
- MGRKCSVENCTSDSTRPEHVGVTFHKVPHHSDVRPKWISLCRIPDDKSNAKVLYVCSRHFLRADFCSFKGKKYMLRQGVLPSVFPWDKSKLEAIKAEASTKKEVDNSKKKYHVKEKRIREKTKGSVPITNETFPSKEVKSESEEIKIESNSISELKTYMNPKETDEVKTEIKEEIDAFDQHQRSQSSSAASSPLNFAINSKIEVLDNNIWYTAKINEVDYEESEILIHFEHYSNKYDEWISMTSPRLRPVHPKQTEKYEEGERCMAIWSDARKFPATVTKILDNETVEVVFDDGLVKTVKIHKMSKISKTKPAQASPLFEPVKSTKQERRDKKRKLNVAALFGKRSRLSHSDEKKNKTSSVTLSSDELISSPVEHTESKGVMPVANSPIQSTEQWLPKFEDGKPVGVDSTIDGNDGVRKSVIVPDPRIPHDWQRHLAQRSHGTSAGKWDTVFIGPDGKKFRNKTEIKTYLEQNPNIDITLDIFDFSIYRNGHKRKLIKPKTKSDNQEASEESIKEEPPVKEEVPEPPVNLKIIFENDSYKCPIEGCGKNFRRENLALMHVKHYHSEYTKYLDSTPNVADLAYARTVGENLDRSPGSGKPITPKASADKTPVLTKLPKSLHVATTESKTAGSMSPIPEAKTRDAEIIKLLNQKVSDSDKEIQPLPSGLPSNMYPDIKLKDLLSKTEEIPLKDDINIKTLCASRPTHGIKTLLPVRSSQTSNENHEEKVNIKRKRVPSDGLDTHKGKYYNFTYTISLDAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00376381;
- 90% Identity
- iTF_00376381;
- 80% Identity
- iTF_00376381;