Ctra043151.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991046.1:10508784-10509989[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0058 1e+02 4.6 0.1 21 52 86 117 68 118 0.88 2 9 0.045 8e+02 1.8 0.0 19 44 140 165 134 169 0.86 3 9 5.9e-05 1 11.0 0.0 21 44 170 193 166 197 0.91 4 9 0.00033 5.7 8.6 0.1 21 43 198 220 194 227 0.87 5 9 0.0018 31 6.3 0.2 18 45 250 278 243 285 0.81 6 9 0.003 52 5.6 0.1 8 51 269 312 265 315 0.78 7 9 0.13 2.4e+03 0.3 0.0 22 48 311 337 307 341 0.81 8 9 0.018 3.1e+02 3.1 0.2 21 44 338 362 327 367 0.79 9 9 0.0078 1.4e+02 4.2 0.2 22 52 368 398 363 400 0.86
Sequence Information
- Coding Sequence
- ATGTCTTACAGACAACTTCAAAATGATCGACCATCGGTCATTAGATACGCACCAAAGAGAAGTAGGAGAGACTCCATCCCCACGCCAAAGGATAAGAAACTTTCCACTCCTCCACCAAGCAGAGAACAGAGAGAGCCAACTCCATCTAATTCTGGTCCCGAAAAGGTACCATCAAAGCCTCGAAGAACAACCACCCCAAGGAAGATAAAACCAAAGTTCTGTAACCCAAAATCTCAGATCTGGCGACCATATACCAAAGAAAAGCCTTACAAATGTGATGTATGCAAAAAAAGTTTCGATAAGAAGTGCGACCTTCAACGACATATCCCTATTCACTCAGTCCTCAAACCGTTCAAATGTACGCTATGTAAAGAGAGTTTTACTCGTGAGAATCTTTTGAAAACTCACATCAGTGCACATAAGAATGAAAAACCACATAAGTGTAAATTATGTGAATGCAGTTTCATGCTGCCTGTAGATTTGAAACGCCACATTTTTACACACAccggtgaaaaaccttataaatgTGATATTTGCGAAATGGCGTTCCGTCAACCTGGGGATTTGAAGAGGCATATCCGGAAACATACGGGTGAAAAACCATATAAGTGTAATATATGCTATAAAAGTTATGCTCAACTTCACAGTTTGAAGAAGCACAATCTTACCCATACAGGTGAAAAAGATCATAAGTGtgatcaatgtcaaaaatgcttTAGTAACGCAGAAGCCTTGAAGACTCATAAACGTACACACAGTGATGAACAGCCACACAAATGCGATGTTTGCGAGAGAAGGTTCACTCAACCAGAAGGTTTGAAAAAACATTACCGTATTCATACCGGTGAAAAACGTTACAAATGTGAGACTTGTCAAAAAGAATTCAGAGACTCGCAGGATTTGAAAAAGCATGTTCGGATACACACCGGTGAAAAACCGTTTAAATGTGATCAGTGTCCCGATACGTTTAAGGAAAGGGGTCACTTGAAAAGGCATAAGCGTATACATACGAATGAAAAACCGTTTAAGTGCAGTATATGTTTGAAATCAAGTTTTAGAGACGCCAGCGATCGTAGGAAGCATATTCGTACTCATATCCGCGATAAGCCGTATACATGCCATATatgtcaggaaagttttgttTATAAACCTACTTTGAAATCTCATCTTGCGATGCATGAGAAAAATAAACCAGTAATTCATTGA
- Protein Sequence
- MSYRQLQNDRPSVIRYAPKRSRRDSIPTPKDKKLSTPPPSREQREPTPSNSGPEKVPSKPRRTTTPRKIKPKFCNPKSQIWRPYTKEKPYKCDVCKKSFDKKCDLQRHIPIHSVLKPFKCTLCKESFTRENLLKTHISAHKNEKPHKCKLCECSFMLPVDLKRHIFTHTGEKPYKCDICEMAFRQPGDLKRHIRKHTGEKPYKCNICYKSYAQLHSLKKHNLTHTGEKDHKCDQCQKCFSNAEALKTHKRTHSDEQPHKCDVCERRFTQPEGLKKHYRIHTGEKRYKCETCQKEFRDSQDLKKHVRIHTGEKPFKCDQCPDTFKERGHLKRHKRIHTNEKPFKCSICLKSSFRDASDRRKHIRTHIRDKPYTCHICQESFVYKPTLKSHLAMHEKNKPVIH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00375564;
- 90% Identity
- iTF_00375564;
- 80% Identity
- iTF_00375564;