Basic Information

Insect: Cosmia trapezina
Gene Symbol: Bcl11a_1
Assembly: GCA_905163495.1
Location: LR991039.1:6890991-6911192[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0064 0.87 11.7 1.9 2 23 73 94 72 94 0.96

2 12 0.023 3.1 9.9 0.5 2 23 101 123 100 123 0.94

3 12 0.41 55 6.0 0.4 2 23 131 153 130 153 0.90

4 12 3.6e-05 0.0049 18.7 2.6 1 23 159 181 159 181 0.97

5 12 1.7e-07 2.3e-05 26.1 3.1 1 23 187 209 187 209 0.96

6 12 0.012 1.6 10.9 2.8 1 21 215 235 215 239 0.90

7 12 0.49 67 5.7 2.7 3 19 256 272 255 277 0.92

8 12 1.6e-05 0.0022 19.8 1.7 1 23 603 625 603 625 0.98

9 12 5.1e-06 0.00069 21.4 6.7 1 23 632 654 632 655 0.96

10 12 0.0045 0.61 12.2 2.7 1 23 663 686 663 686 0.95

11 12 0.0025 0.34 12.9 3.7 1 23 692 716 692 716 0.95

12 12 0.00025 0.034 16.1 1.1 1 21 722 742 722 743 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0064	0.87	11.7	1.9	2	23	73	94	72	94	0.96
2	12	0.023	3.1	9.9	0.5	2	23	101	123	100	123	0.94
3	12	0.41	55	6.0	0.4	2	23	131	153	130	153	0.90
4	12	3.6e-05	0.0049	18.7	2.6	1	23	159	181	159	181	0.97
5	12	1.7e-07	2.3e-05	26.1	3.1	1	23	187	209	187	209	0.96
6	12	0.012	1.6	10.9	2.8	1	21	215	235	215	239	0.90
7	12	0.49	67	5.7	2.7	3	19	256	272	255	277	0.92
8	12	1.6e-05	0.0022	19.8	1.7	1	23	603	625	603	625	0.98
9	12	5.1e-06	0.00069	21.4	6.7	1	23	632	654	632	655	0.96
10	12	0.0045	0.61	12.2	2.7	1	23	663	686	663	686	0.95
11	12	0.0025	0.34	12.9	3.7	1	23	692	716	692	716	0.95
12	12	0.00025	0.034	16.1	1.1	1	21	722	742	722	743	0.95

Sequence Information

Coding Sequence: ATGGATTCGAATTTACCATTTTTTAGTCTCCCaTTCGTGGATTCGGAAACTTCTGACTTTTTATCGAGGATCAAGCCGCAGGAGTGTGCGTACGATGAGTTGCACGGGACTTTACCATCCCACGGAGCTTTGTTGGGCCCTGACGATGTCTTGGCCCAGTTTCTTTCTGGAGACGAGCCGTTGGAGGAGCCCGACTTGAACGGGCCTACTACGTTACACTGTGAGATCTGCAAGAAGCAGTTTGATAATGCTAAGAAGTATTATGGACATTTGAGGGTCCATTCCAAGGATAACCTTTGGGTTTGTGAGCAATGTCCTGACCTGAAGTTCTCGACCAAGCAGCAGCTGATGAAACACAGCCTGACTCACAAGCCTCTGGAGAGAGAATGGAAGTGTCTGCAGTGCACCATGGCCTTTGAGGCTCTGTATAAACTACAGCAACATCTGTTTGCCAAGCATTTAAACTACAAGCCTCACAAGTGCGATCAATGTGAGAAGTCTTTCACTAAGCCTTCAGACTTGGACAAACATAAAAGCATACATAGTGATGTTAAGAGGCATGCCTGTCCTAAATGCGACATGCGTTTCAAGGACAAGTCCAATCTGAAGCGCCACATGCTGCGGCACAGTGGGGATAAGCCTTACTGCTGTGCGGGATGCGGGAACAGTTTTAAACAGCTGGCTTCAATGAAGCGTCACGCCCAGAACTGCGCGCACTACAAGGAACCGAGCGAGTCTGTGGACAAGAGCACTCGTAAGAACCACTGCCGTGTCTGTGGCATGAGCTTCCAGTTCAAGAGCGCTTTGTTGGAGCATTGTGTCAGGCAACACACTAATACGGGGGGTGTTGCGCAAAACGCAAAACCGCCCGAACCCGACAAAGAAGATAAAACTCATTTAAACGACACAAACCGCATCGTGGACAACATAGTGGATGATATTCTATCCGCTGAAGACGACTACATGACCATGTCTACACAAAACGAAATACTCAACGTTTACAATCCAACTGATATCGACAATAACCCAGAAAACTTAATGCAAATAGAACTATTAAAAGAAATGAATCAACTACACATTTTAGATGGAGAACTATTCTATAATGACATAGATTTTGATAGCATACAACCTAGTCACATGTTTAATACTAACACAAATGATATGGATTACGGTACGGATAAAACTGCTGAAGTTTTATTCGATTTTACTGAAGGAAGCAAAAGTATGGATCAGGATATCATGAACACCTTATTCCATGTCAAAGCTGAGTACTTACCTGATGAACTACTAAATCCTCCAGAAATTTTGAATCCTCCTGAAAAAACTAGCGAAGTAGACAGTCATAATCATGTATCAGTAAATGAATGTGCCACTATATTTGAGAGTgacgttgatttagaagctagTACTAACCTAGCTGCAAATTTGAACCAGCTCATCGGCGAAAATAGTGTCCAATACATTTCAACAGAAGACGATGATACTTTTATAATAAGTTTGAATAGCGAAATTGATGCTGAACAATTGACTGACATGTTAAATATAGGAGTTGAGTTAGTTAATGATAAGGCTAAGGAACCGAGTATACCTGAAATTAAGAAAGAGACTGTAAGTCTAGCAAATATAGAGCTTTATGTGAAGATTGAAAAGCCGTCAGTAAAAGAGCCCCAAAATGAGCAACTAGAAGATCGCCTACACTGGCCTATGGTGGTTAAGATTGAAGAGTCTAAGAGTGTCCCCCCAATGAGTTTTATGGCTACAGAAGAGAAGAAAGTTATAAAGAGGAAACCGAAAAAGAGAGTGGTGTATGTTTGTAGAACATGCAATAAGGTGTTCTATAAGAACGATAATTATAAGTCTCATATAGCGACCCACGAGCCGTCCCTCCGCCGTCACAAGTGTAAGATCTGCGGCGAGCGCTTCAGTTACCGCTCGACGCTCAACAAGCACACGCGCAGTCACCACACGCCCTACGTGCAGTCTGAGCATTGCTGTCAGATATGTGAGCGGAACTTCACGTTCGCGTGGATGTTGAAAGACCATATCGAGCGCGACCACGATGGGCTGACGCCGCATGTGTGCGACTATAAGGACTGCCGCAAGAGCTTCTTCAAGAAATCAGACCTGGTTGTACATAAGAGGTACCACACAGGGGAGCGTCCGTATTCCTGCGATATCTGCAAGAAAGCGTTCCTGCACGCGAGTCATCTCAGGCGCCACGAGCGGGCAGTCGATTGCACCAAGCTCGTATGCAAAACGGAGGCGCGTACATCACTACCTCAAAAGCAAAAGGAGCTTCCAACGAAGAGCACAAACTGTGATactaaagttaaaataaaataa
Protein Sequence: MDSNLPFFSLPFVDSETSDFLSRIKPQECAYDELHGTLPSHGALLGPDDVLAQFLSGDEPLEEPDLNGPTTLHCEICKKQFDNAKKYYGHLRVHSKDNLWVCEQCPDLKFSTKQQLMKHSLTHKPLEREWKCLQCTMAFEALYKLQQHLFAKHLNYKPHKCDQCEKSFTKPSDLDKHKSIHSDVKRHACPKCDMRFKDKSNLKRHMLRHSGDKPYCCAGCGNSFKQLASMKRHAQNCAHYKEPSESVDKSTRKNHCRVCGMSFQFKSALLEHCVRQHTNTGGVAQNAKPPEPDKEDKTHLNDTNRIVDNIVDDILSAEDDYMTMSTQNEILNVYNPTDIDNNPENLMQIELLKEMNQLHILDGELFYNDIDFDSIQPSHMFNTNTNDMDYGTDKTAEVLFDFTEGSKSMDQDIMNTLFHVKAEYLPDELLNPPEILNPPEKTSEVDSHNHVSVNECATIFESDVDLEASTNLAANLNQLIGENSVQYISTEDDDTFIISLNSEIDAEQLTDMLNIGVELVNDKAKEPSIPEIKKETVSLANIELYVKIEKPSVKEPQNEQLEDRLHWPMVVKIEESKSVPPMSFMATEEKKVIKRKPKKRVVYVCRTCNKVFYKNDNYKSHIATHEPSLRRHKCKICGERFSYRSTLNKHTRSHHTPYVQSEHCCQICERNFTFAWMLKDHIERDHDGLTPHVCDYKDCRKSFFKKSDLVVHKRYHTGERPYSCDICKKAFLHASHLRRHERAVDCTKLVCKTEARTSLPQKQKELPTKSTNCDTKVKIK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01527643;
90% Identity: iTF_00071746;
80% Identity: -