Ctra008905.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991023.1:14308985-14313284[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-07 0.00038 21.6 0.0 2 37 13 49 12 54 0.91 2 2 4.1 3.1e+03 -0.5 0.1 17 25 106 114 105 114 0.87
Sequence Information
- Coding Sequence
- ATGGATGACCCCAACAAGAAGAACAGAAAATACTCGGAGACCGATCTCAGAACCGCTGTTGAAAATGTTTTGAGTTCAACAATGACAGTTTACAGAGCTTCGAAGGAGTTTAAGATTCCATGGTCGACATTAAAAGAGAATGTGACGAAGTACAAAACTCTACGAGAGGGTAATCAAGATGCACAGATCGTAATGTCCAAGATAGGAAGGCCGTTTGCGTTACCTGTTGAAATAGAACAAAAGTTACTGGCCTATATTATTGAGATGCAAGAACGTGGTTTTGGTCTTACAGTTACCAAAATAAAGCAAATAGCATTATCTTTAGCAAAAGCTGCGAACATTTGCTGCACATTCAATGACAAAAAGGGATCTGCAGGTTGGAATTGCTGTGAATCCACTGGCACTTGCTCCAAAGAGTTGACAGACAAACCATTTCCAGAATCGGCAGAAGAGGTCACACTTCATAAAGATGAACAAACTCAAATTTTAGAGGAAATCGTATATTGCAACATTGACCAAGAAAATGGGTCCCTGGAGACAGATTACCTTGTAGATCTTCATTCAGCGTGTTCTCCATTAGAATGTGAAGAAAATGGATGTCTAAGAACAGCTCCGGTACCTAAACAAAACTTCACAGTTCATTTagataagattttaaaagtgcCCAAGTTAGAGcagaatcaaaataaaaaaaagagaagGACCGTCCCTCATGCACGATGTTTAACTCCTATGGCTGACAAGGACCTAAACGACGCTGCTGTTCCTAGCACGTCAAAATCTGAATCAAAAGTGAAACGAAGTAAAagagcaaataaaaataatactgcaCCTGCGAAGAAGAAAAATAGAACTGAAGACGACGATTGGCTATGTGAAATATGTAAGAGATGGTACTCAGAAGATGCAGCTTCTAAAAATGGAGCAGACTGGATTTCTTGTTCCTTGTGCTCTAAAACGTACCACGTACATTGCCAAAGTCAAGAATTTGAGGCTATTGAGACGATTTTTAAGTGTGATATGTGTTGCGCCGAAGAATAA
- Protein Sequence
- MDDPNKKNRKYSETDLRTAVENVLSSTMTVYRASKEFKIPWSTLKENVTKYKTLREGNQDAQIVMSKIGRPFALPVEIEQKLLAYIIEMQERGFGLTVTKIKQIALSLAKAANICCTFNDKKGSAGWNCCESTGTCSKELTDKPFPESAEEVTLHKDEQTQILEEIVYCNIDQENGSLETDYLVDLHSACSPLECEENGCLRTAPVPKQNFTVHLDKILKVPKLEQNQNKKKRRTVPHARCLTPMADKDLNDAAVPSTSKSESKVKRSKRANKNNTAPAKKKNRTEDDDWLCEICKRWYSEDAASKNGADWISCSLCSKTYHVHCQSQEFEAIETIFKCDMCCAEE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00122331;
- 90% Identity
- -
- 80% Identity
- -