Acre027432.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451374.1:5655027-5658998[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-07 0.00021 21.9 0.0 2 37 55 91 54 96 0.91 2 2 4.2 2.5e+03 -0.7 0.1 17 25 148 156 147 156 0.87
Sequence Information
- Coding Sequence
- ATGCAACATCTTGATATCGCCCAAATAGTGATAGAAGATATAGTAGCTCGACAGTTGGAGCCTACTGCGTTCATTGTCGACCCTGTTGGCAAAGAACGGAACGAACGCACCAGCGACAAATATATCATGGATGACCCCAACAAGAAGAACAGAAAATACTCGGAGACCGATCTCAAAACCGCTGttgaaaatgttttgagttCAACAATGACAGTTTACAGAGCTTCGAAGGAGTTTAAGATTCCATGGTCGACATTAAAAGAGAATGTGACGAAGTACAAAACTCTACGAGAGGGTAATCAAGATGCACAGATCGTAATGTCCAAGATAGGAAGGCCGTTTGCGTTACCTGTTGAAATAGAACAAAAGTTACTGGCCTATATTATTGAGATGCAAGAACGTGGTTTTGGTCTTACAGTTACCAAAATAAAGCAAATAGCATTATCTTTAGCAAAAGCTGCAAACATTTGCTGCACATTCAATGACAAAAAGGGATCTGCAGGTTGGAATTGGTGGGTGAAGTATAAAGAACGCTACGGGTTGTCTTTGCGAACACCGGAAAATCTTTCAGCAGAATCGGCAGAAGAGGTCACACTTCATAAAGATGAACAAACTCAAATTTTAGAGGAAATCGTATATTGCAACATTGACCAAGAAAATGGGTCCCTGGAGACAGATTACCTTGTAGATCTTCATTCAGCGTGTTCTCCATTAGAATGTGAAGAAAATGGATGTCTAAGAACAGGTGACTCTCTATGTGATCCTCTTCATTCAGCGGGTTTTCAATTTGAATGTGCCAAGCTACCTGTCCAGCTTGAAGAAGAAGTAATTATGGATGATATTCCGGagaaGAGGACCGTCCCTCATGCACGATGTTTAACTCCTATGGCTGACAAGGACCTAAACGACGCTGCTGTTCCTAGCACGTCAAAATCTGAATCAAAAGTGAAACGAATTAAGagagcaaataaaaataatactgcaCCTGCGAAGAAGAAAAATAGAACTGAAGACGACGATTGGCTATGTGAAATATGTAAGAGATGGTACTCAGAAGATGCAGCTTCTAAAAATGGAGCAGACTGGATTTCTTGTTCCTTCTGCTCTAAAACGTACCACGTACATTGCCAAAGTCAAGAATTTGAGGCTATTGAGACGATTTTTAAGTGTGATATGTGTTGCGCCGAAGAATAA
- Protein Sequence
- MQHLDIAQIVIEDIVARQLEPTAFIVDPVGKERNERTSDKYIMDDPNKKNRKYSETDLKTAVENVLSSTMTVYRASKEFKIPWSTLKENVTKYKTLREGNQDAQIVMSKIGRPFALPVEIEQKLLAYIIEMQERGFGLTVTKIKQIALSLAKAANICCTFNDKKGSAGWNWWVKYKERYGLSLRTPENLSAESAEEVTLHKDEQTQILEEIVYCNIDQENGSLETDYLVDLHSACSPLECEENGCLRTGDSLCDPLHSAGFQFECAKLPVQLEEEVIMDDIPEKRTVPHARCLTPMADKDLNDAAVPSTSKSESKVKRIKRANKNNTAPAKKKNRTEDDDWLCEICKRWYSEDAASKNGADWISCSFCSKTYHVHCQSQEFEAIETIFKCDMCCAEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01093037; iTF_00375151; iTF_01031088;
- 90% Identity
- -
- 80% Identity
- -