Ctra036419.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cosmia trapezina
Gene Symbol
-
Assembly
GCA_905163495.1
Location
LR991040.1:18095496-18131123[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1e-07 7.6e-05 23.9 0.0 1 31 233 263 233 264 0.92

Sequence Information

Coding Sequence
ATGTCGGAGGAAATGGCGGTGTCTGATAACACAACTGGGGACGAAGCTAAAGTTAGCAACGATGAGGCGACGACGCCGACTGTGGCGGAGCCCGAGGAGGTGGCGGTGGAGACGCCAATCGAGCCTGTAGTTCCTCCGGTCGTGCAGCCCCCAGCTTTGGCGGAAGAAGATCCAGGCCCAGAAATAGAACCAAAGATCGAAAACAAACCAGAAGTGAAAGTAGAACCAGAATCTGAAAACATAGATGTACCAATAGAGACCCCAGAATTTGACGTAGAAATTAAGAAGGAGGACGAAGAAGATGTGAAATTTGAAATTGAGACAGTTGAGCATAATATTGAGGAAGACATTAAGAGAGGAATCAAGCGGAGAGCTTCGTCCGCATTCAGTGATGTTGATGATGAGGAGTTTAAAGGCTTTGATGAAATCAAACTTGAGGTTAAGGCTGAGGACTACAGTCGTATATTGGAGCGACTGGAGGCGGAGGTGACAGCAGCCAGCAAGGACCTGGTGCCACTGAGGACCGTGATGGCTACGCCCCCCGCACCCGGCAGAGCCTCCAAACGACCGCGTAAAGACACTGACGGATCCAGGCCATCATCAGCTTTATCTTCAAGATCTGACGGCGACGGCGCTACTGATgtGCCTCCTGAGAAAATGAaacttaaaaaacaaaagaggACTAACCTCAAATATACCAAAGAAGCACTGGCTCAAGCTGTTCAGGCAGTCAGAACAAAAAGGAAAGGCATTAGAAAAGCTTGCCGGCAGTATGGCGTTCCTCCCACAGTCCAGGACCGACCCTCAGGTAGGGCTAAGGAACAAGCTCGGAGAGTAGGACCAGAGCCCATACTAGGCATTGATGGTGAACAAAAAGTAGTGGAATGGATCAAAGAATTAGCCAAGTGTGGGTTTTCTCCTAGTTTGTTCCCAGAAGGGTGCCCTAGAAAACAATGGTACTTAGGTTTTCTTAGGAGGCATCCGGAGATCAGCATAGCGCCTAAAGGAATTAACAAAGACAGCGAAGTGGCAACAGAAAGCTTAAAAAAGAAATGGTTTAAAGATCTTGAAGCTTTTTTGACTGAAAGAAGAATGACGGACATTATGAAAGATCCTGACAGAATATTCAATGCTGGTGAGACTAGATTTTCATTAACTCCAAAATCAGGTAAACTCCTCACCCCGGAAGGCTACGAAAATGTTAACATGTATAAAAgaggaaatgaaaaaaaaacacttacggTTTTAATAATGATGTCTGCATCGGGTACGGTTTGCCCTCCGCTTTTGGTGTTTCCGTGCAGTAGACCCTCAAAACCGATTTTAGACAATGTACCAGGTGATTGGCTCGTAGGAAGATCTGATTCAGGTAGGATGGGATTAAGTGTATTTTACGAATACTTTACTAACGGCTTTAATAACTGGTTAGTGGAAAATAAAGTCAAAAAACCAGTAATTGTTTTTGTAGATGGGcataaatcaaataataatatgtcaaTGCCTTTAAGTAAATTTTGTGAAGGTAATGGTATCATTTTATATGCTTTACCACCAAATACAACTCATCAAATCATGCAACCAGCTGAGGTTAGTGTGTTAAGATATTTAAAACAAGACTGGAAAAATACCCTTAAAAACTGGCAAGCCAAACCCGAAAACCTTAAAAAAACTGTGACGAAGAAAAACTTTAGCAAAGTGTTAAAAGATATCCTGGATACAGATATGACACAAACTATAAGGAACGGATTTAGAAATTGTGGGCTATTCCCGTTTGGTGGAAATGCAGTGGATTTCACGAAATGCGTAGTGAACATTCGAGAAAGAAGGCAGGAGAGGTCACTATCCTGCGCTGTGTTCACAAAACGAGACTTTTCATCTGCaataaaagtgatttttttaataaaggacAATTTGGTAAAGAATGGGATTGATCCAGATACGGTTTGCAATGAAATAGAGTTGGCAAAATCAACCTTCAACAAACATCGTCTGATAATTGAAGGTTCGATCCAGAAAAATAATAGCGCCAGTGCAACCTCATCGCCCGCACAACGAGGCGGTCGCCGAGCTACCATTGAGATGTCCTCTCCCTTACTGCGAGTACCTTTGGAACGTGGCTGGAAGAGAGAGCTCGTGTACCGCGCGGCGCTCGATGCTCATTCGAGGCGTAATGCCGATATCTATTACTATACGCCGTATGGGAAGAAGCTGCGCTCTACTAGAGAAGTCTCAGAACATCTTTCCGGTACGGGATTGACTGTAGATCACTTTTCCTTCTTCAAAGAACCGCTCGGAGTCGACGACCctgaaaaagaaataataagAGACGCAAAACTAATGCGTCGCGTGGACTCCCCGGTTGCGGCGACCGTTCAACCCGTTCAGGTGGAAGGCAAAAGGACACCTAAGCCAAAAGTGCCCAAGGGAGCTAGTCCTGAACCTGTGCCTCCGGCCACCGCTGCAGCTGCGAACAAGTCACCACCAGCTAAGATAAAGGTGAAATCAGTGGGTTCCCGACTAAGCAACAGCGCACCGCCAGCAGCGCCCACGCCACCCGCCAAACAACAAAAGAAACCACCGTCGCAACCGCCCCAACAACAACAGCCACCTCAGCCACAACAACTACCACCGCCAACAACCGTCAGCAACACAGACAACAATAACTCTGCCGCGTGGAAGAAACCGAGGCCTCCGCCCCCCACGCCGCCGCCGCTGCAGGGCCGCCCGCCCGTCGAGGCGGCGCCCGAGCCCCCCAACATAAGCTTCGCCGCTCAAAGCCCGGAGGCTCCCCGCTCGGCCGCGGTACAGCCGTGCTCGATGTCGTGCGGGCGCGGCGCCGTGCCGTCGCTGTCGTGCGCGGCGTGCCTGTGTCTGTACCATCCCGTCTGTGCGGGCTATATGCACGCCGCGCCGCCTGACCCGTTCTTTTGCAAGAACTGCCGCAAAACATCATCCCCGCCGATCGAGCCGCCGCCCCTCACTCACAAGTCCGGTATAACGACCACCAGCATACCGGTCCCGGTGCCCATTCCCGTGCCGGTCCCGGTGCTCGCGCCGGTACCGAGACGCGTTCCAGTGCCGGTACCGGTTCCCGTGCCGGCTAAAGTGCCGAGGGATAAGCGGGTGCTCCTGAGGATGAAGGTAGCAGGCGGCACCCCAGACGGCGAACGCGTATGGGCCGTCGCAGGCACGCCTCCTGTGTTACCTGCCGCCCCGGCCCCCGCGCCCATACCGGCCCCCTTACCGGTACCAATACCGGTACCAGTGCCAGTCCCAGTACCCGCTGCCGTAGCCGCACGAGGCAGGGCCCCGCGCCCCGCCCTGCCGCAGGGACTGGCCATACTGAATGGAAGACGCTTCGTGGTCGTGCCAAGGAATATGGTGCATGCTGGTGCTGGACATGCTGCTAAATGA
Protein Sequence
MSEEMAVSDNTTGDEAKVSNDEATTPTVAEPEEVAVETPIEPVVPPVVQPPALAEEDPGPEIEPKIENKPEVKVEPESENIDVPIETPEFDVEIKKEDEEDVKFEIETVEHNIEEDIKRGIKRRASSAFSDVDDEEFKGFDEIKLEVKAEDYSRILERLEAEVTAASKDLVPLRTVMATPPAPGRASKRPRKDTDGSRPSSALSSRSDGDGATDVPPEKMKLKKQKRTNLKYTKEALAQAVQAVRTKRKGIRKACRQYGVPPTVQDRPSGRAKEQARRVGPEPILGIDGEQKVVEWIKELAKCGFSPSLFPEGCPRKQWYLGFLRRHPEISIAPKGINKDSEVATESLKKKWFKDLEAFLTERRMTDIMKDPDRIFNAGETRFSLTPKSGKLLTPEGYENVNMYKRGNEKKTLTVLIMMSASGTVCPPLLVFPCSRPSKPILDNVPGDWLVGRSDSGRMGLSVFYEYFTNGFNNWLVENKVKKPVIVFVDGHKSNNNMSMPLSKFCEGNGIILYALPPNTTHQIMQPAEVSVLRYLKQDWKNTLKNWQAKPENLKKTVTKKNFSKVLKDILDTDMTQTIRNGFRNCGLFPFGGNAVDFTKCVVNIRERRQERSLSCAVFTKRDFSSAIKVIFLIKDNLVKNGIDPDTVCNEIELAKSTFNKHRLIIEGSIQKNNSASATSSPAQRGGRRATIEMSSPLLRVPLERGWKRELVYRAALDAHSRRNADIYYYTPYGKKLRSTREVSEHLSGTGLTVDHFSFFKEPLGVDDPEKEIIRDAKLMRRVDSPVAATVQPVQVEGKRTPKPKVPKGASPEPVPPATAAAANKSPPAKIKVKSVGSRLSNSAPPAAPTPPAKQQKKPPSQPPQQQQPPQPQQLPPPTTVSNTDNNNSAAWKKPRPPPPTPPPLQGRPPVEAAPEPPNISFAAQSPEAPRSAAVQPCSMSCGRGAVPSLSCAACLCLYHPVCAGYMHAAPPDPFFCKNCRKTSSPPIEPPPLTHKSGITTTSIPVPVPIPVPVPVLAPVPRRVPVPVPVPVPAKVPRDKRVLLRMKVAGGTPDGERVWAVAGTPPVLPAAPAPAPIPAPLPVPIPVPVPVPVPAAVAARGRAPRPALPQGLAILNGRRFVVVPRNMVHAGAGHAAK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00375246;
90% Identity
iTF_00375246;
80% Identity
iTF_00375246;