Ctra013615.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991026.1:14049540-14049941[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-12 2.5e-09 38.2 0.1 3 37 17 51 15 56 0.94 2 2 2.3 1.7e+03 0.3 0.0 9 22 51 64 51 65 0.83
Sequence Information
- Coding Sequence
- ATGGTAcgaacttacaaaaagaaaagttCCAGAGGCAGTTGGTCTGTAGAAAGCATGAAACACGCAATTGATGCAGTTTTAAGCAAATCAGCAGGCTACAGAAAAGCAGCTCAATTGTACGGTGTTCCACAGACCACATTGGAGCGTCACGTCGCAAAAATAAGGAAGGGCGAGGTATCTCTTAATTCAGCTCCAGGTAACTTTAAACCCGTATTTTCCAAACAAGAAGAAGAGGAGCTTGTTAGGTACGTAAAAGATATGGAAAAACGATTATTTCGATTGACAACTGTCGGCCTACGAAAACTAGCCTATCAGCTCGCAGAAAAAAATGCTAAGGCTCACAATTTTAACCATGATAAAAAGATTGCTGGTATAGATTGGTTAAAAGAAAAGATTGGTTAA
- Protein Sequence
- MVRTYKKKSSRGSWSVESMKHAIDAVLSKSAGYRKAAQLYGVPQTTLERHVAKIRKGEVSLNSAPGNFKPVFSKQEEEELVRYVKDMEKRLFRLTTVGLRKLAYQLAEKNAKAHNFNHDKKIAGIDWLKEKIG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264492;
- 90% Identity
- iTF_01264492;
- 80% Identity
- -