Ccil031681.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- -
- Assembly
- GCA_038030265.1
- Location
- CM075942.1:58303492-58305021[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.8 1.7e+04 -2.8 0.0 12 30 183 201 178 203 0.83 2 9 0.027 5.8e+02 1.9 0.3 26 44 225 243 220 249 0.87 3 9 0.00064 14 7.1 0.4 18 46 247 275 243 282 0.84 4 9 0.1 2.2e+03 0.1 0.1 21 44 306 329 300 332 0.83 5 9 0.0052 1.1e+02 4.2 0.0 10 48 322 361 317 365 0.82 6 9 0.00075 16 6.9 0.2 21 51 362 392 358 395 0.85 7 9 0.00034 7.5 8.0 0.4 21 52 418 449 410 450 0.89 8 9 0.0017 38 5.8 0.1 23 44 448 469 443 473 0.90 9 9 7.2e-05 1.6 10.2 0.0 21 44 474 497 471 501 0.91
Sequence Information
- Coding Sequence
- ATGGCTCCGAAGTCCGAAGGAAATGATGTTGAATCAGAAGCAGCCCTGAGCGAAGTAGCTTCCTTGGCCTCGGACTACGAAGGCGAAGATGACTGTGACGATCCCCTTGTTCGTCGAATGTCCTGTTTATTATGCGACTACTCGTGCACGTCAGCTCAGACTCTAAAAAAACATATTTATTCTCACTTGAATGGAAAGAAATCAGCCAGGAAATCTAAAGAGGGAATCGATTCTACCGGCGTGAGAAGAGGATTGTTGAATACGGCTTCTCCCTGCGGTGAAAAGTGTCCTTTCACGGTAACCAGCGCCAAGCGACACACAAAATACCATCGTAAGGGTTCTAAAGCAGCCGCTACTTTCGGTGAATTGAACAAGATTTTCGCCTGTCAGTTGTGTATTTATCAATGTCAGGGCGCCTCAACTATGATCGATCATATCAGATCGCATAAAGGTGACGAGCTTACGTGTAATTTGTGTGGTTATAAATGTGCCAAATTTGGTTACCTTGTTCTTCACACAAAATTACACGAAAAAGAGGTCGACAAGACATCAGCCCCGATGGGAACTTCAACGTCTGATCGCTCTTTCAATTGTACTCTGTGCGAATACAAGTGCGGTGACATTTCCACCGTTATGTCGCACATTTTGACTCATTCGCTACCGCAGTTGTTTTCATGTTCAGTTTGTAACTCTCGTTTTACCTCGCAAAAGAACTTAAGAGCTCACGTTGCCCAGCACAGACGAGCCGAAGAGAAACCGTTCGCCTGTCCTCACTGCGACCACAAGTATACGCGCGCCGATAATCTTCGCGTTCACATTCGCAATCACACCGGCGTTAAACCCTATTCATGCGCGTCGTGCAGTTTTAAATGCACCCGAGCCGACATTTTAAAAAGTCACGTCCGCGGCCACACTGGAGAAAAGCCCTACTCGTGCACTCAGTGTGTCTACAGGTGCCGCCAGCCTGGACTTCTCAAAGTGCACATGCGCTCCCACACCGGCGAGCGTCCATTCGAGTGTAAAGTGTGCGGAAAGAATTTCGGTTTCGCGATGAATTTGAAAGTTCACATGCGAATACATACCGGCGAGAAACCGTATGCCTGCCCCACCTGCGACTATCGAAGCACCACCGCCATGAATCTCCGTACACACATGAGTGTACACACTGGACGTAAGCCATACGCTTGTCATTCGTGCGATTATAGTTGTAGTACCGCCGACAATTTGAAAACTCACGCGATGACCCATACAGGGGAAAAACCATTCTCTTGTCCTCAGTGTGATTTCAAAACGCGGCGAGCTCAATGTATTCGAAAGCACATGCTCACCCATACCGGGGCTAAACCGTTCGAATGTCCCAACTGTTTTCAGAGGTTCACCACTTCGTCTCATCTTAAGAGGCACATGATGACGCACACAGGTGAAAAACCATTCTCTTGCCCCTTGTGCGATTATAAATGTTCTCAATCTTGGAATCTTAAGGCTCACGTGAGCACTCACGGACAAAAAGGGGAGTTATTTCTGTTTTaa
- Protein Sequence
- MAPKSEGNDVESEAALSEVASLASDYEGEDDCDDPLVRRMSCLLCDYSCTSAQTLKKHIYSHLNGKKSARKSKEGIDSTGVRRGLLNTASPCGEKCPFTVTSAKRHTKYHRKGSKAAATFGELNKIFACQLCIYQCQGASTMIDHIRSHKGDELTCNLCGYKCAKFGYLVLHTKLHEKEVDKTSAPMGTSTSDRSFNCTLCEYKCGDISTVMSHILTHSLPQLFSCSVCNSRFTSQKNLRAHVAQHRRAEEKPFACPHCDHKYTRADNLRVHIRNHTGVKPYSCASCSFKCTRADILKSHVRGHTGEKPYSCTQCVYRCRQPGLLKVHMRSHTGERPFECKVCGKNFGFAMNLKVHMRIHTGEKPYACPTCDYRSTTAMNLRTHMSVHTGRKPYACHSCDYSCSTADNLKTHAMTHTGEKPFSCPQCDFKTRRAQCIRKHMLTHTGAKPFECPNCFQRFTTSSHLKRHMMTHTGEKPFSCPLCDYKCSQSWNLKAHVSTHGQKGELFLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00373378;
- 90% Identity
- iTF_00373378;
- 80% Identity
- iTF_00373378;