Ccil015255.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_038030265.1
- Location
- CM075939.1:38730217-38749845[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-101 6.2e-97 325.8 38.1 1 300 77 383 77 383 0.92 2 2 0.023 1e+03 0.0 5.8 122 171 383 432 381 457 0.64
Sequence Information
- Coding Sequence
- ATGTCCGACGGCGAGGGTCGGTTTGTGTCAATTGTTGATGTCACGTCCGAGTCGGGGTGTTTATCGGATGGCTCGGCCGAGAGTGGAGTGTGCCTTGAAGAGCGTGAACGTGAAGTGACCATAATACGTCTTGGGAGTTCGGAATCGTCGTGTGAGGATGCCgacgaggaggaggaggaagatgAAACGGAGAGGGACGGCGTTGTCACATTTTTGGGAAGTCAAGACGCGGAAGCTCGACTAGCGGCCAAGAGGCAAGCGCGTGCCGAAGCGAGAGAGATTCGCATGCGAGAAATAGAACGACAACAAAAAGAAGCGGAAGAAAATGCCGATCGGATATACGATATGTACTCTACTACGCCTGATGGCGTCAGTCGAACTGCACGAGTCACAGCCGCAGTCAACAGCAGCCGTCTTTCAGCCTCAAACAGTTACCATTCGTCTAGGCGAAGTTCGGAAGATTCGCTGGAGGAGACAGCGTCCCTTAGGGATGTTCGGGGTGAGCTTCGCGAAGTCGAGgataaatttagaaaagcgATGATAGGCAATGCTCAGTTGGACAATGAAAAAGCTGCGGCCGCCTATCAAGTTGAACTGTACAAGGACAAGTACGACGAACTCGAAGAGGAGCACAACCAACTTCAGCGGGAACACAGGGAAAAGTGTCGACAGTTGGAGCAAATGAAAAGGGACGCCGCAAATTTACAGAAAGATCTTGACGCCACCCTGGCGGCTCTTCAAGAAAGGGATAGATTAATAGAAGAACAGGGTTTAGTCATAGTCGGTGGTGATACGTCTTCTAGCGCGTCGGATAGTGAAGAAGAGGACGACAAAGGCGGAGGGAAGGACAACGAGAATAAAAAGGGCGGCGAAAAACATCGAAGAGCTTTAGTTTCAACTGATATGGCTAAATTGTTGAACGCGGTGGGCCATGGATCGCTAGATGTTCGATTGAAAAAACTAGCATCGGAAAGAAATGAAATTCAAGACGAGTTAAGGCATATAAAATTGGAATTGGAAGAAGAAAGAGCGAAATCGAGTCGATTCGGAGCTAGTCCTAGCGAAATGGAAGATTTACAAAGGGAAACGAACAAACAAATGGGCGATTTAAAATTCAAGTTACAAAAAGCCGAACAGGACGTGTCCACACTCCAGGCGACAGTGGCGCGTCTCGACAGTCAAGTGATAAGGTACAAAACGGCGTCGGAAACGGCCGAAAAAGCGGAGGACGAGTTGAAAATGGAGCGAAGGAAACTTCAGCGAGAGCTGAGGGAATGTCAAGCTCGGTGCGAAGaactggaaacatccaattctCACCTTCAGAAAAGGTTGGACAAGCTCAAGACGGCCAAGTCGGCACTGTTGAAAGACTTGTAG
- Protein Sequence
- MSDGEGRFVSIVDVTSESGCLSDGSAESGVCLEEREREVTIIRLGSSESSCEDADEEEEEDETERDGVVTFLGSQDAEARLAAKRQARAEAREIRMREIERQQKEAEENADRIYDMYSTTPDGVSRTARVTAAVNSSRLSASNSYHSSRRSSEDSLEETASLRDVRGELREVEDKFRKAMIGNAQLDNEKAAAAYQVELYKDKYDELEEEHNQLQREHREKCRQLEQMKRDAANLQKDLDATLAALQERDRLIEEQGLVIVGGDTSSSASDSEEEDDKGGGKDNENKKGGEKHRRALVSTDMAKLLNAVGHGSLDVRLKKLASERNEIQDELRHIKLELEEERAKSSRFGASPSEMEDLQRETNKQMGDLKFKLQKAEQDVSTLQATVARLDSQVIRYKTASETAEKAEDELKMERRKLQRELRECQARCEELETSNSHLQKRLDKLKTAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00386350;
- 90% Identity
- -
- 80% Identity
- -