Ccil019409.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- Arid2
- Assembly
- GCA_038030265.1
- Location
- CM075940.1:26101612-26128512[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.56 4.9e+03 -0.5 0.0 15 36 81 102 78 106 0.85 2 3 5 4.3e+04 -4.2 0.0 11 32 397 420 396 426 0.65 3 3 1.2e-14 1.1e-10 43.2 0.0 2 78 598 677 597 678 0.94
Sequence Information
- Coding Sequence
- ATGGCTCTGCTCAACAAGGACCCGTCCACTTACGAGAAGGAAAAGGAACGCTTCCTTCAGGAGCTCACACACTTCCATGAGACCCGAGGGACGCCTTCGCGGAGGCCACCCAAAATAAATGGCTACGAGATTGACTTGTGCATGCTCTACAATTTGGTCACCAGCCGAGGAGGATGGGTCAAGgtgaacAGTCGAAACGAGTGGGATGAAATCCTTTCGGACTTCGATCTTCCTAAGCGATGTGTCAACAGTTCGGTGGCTTTGAAACAAATCTACCTAAGGTATCTCGACAGGTATGAAAAGATTCATTTTCTGGGTGAAGTCGGAGAGAGAGGTGCAGACGACGACGAAGACAGTCGGCATCGGAGATGGTCAGCGAGATCGCTCCATTCCGTGCCTCTCACCTACAATCACGCTCAACATCTCGTTAATGAATCCCTGCGGGAGTATAATGGCCTGTCTGTGGATCTATATAAACCTACAGAATACGAAAAACTGGCACTGTCTCTTATATCTCCTCTACCGAACGAACAAGATTTTGCCATTAATGTGTGCACGCTGCTCTCAAATGAAGGCAAGCACAGTCTTAAGTTGGAGAAACACCCGCGTCTACTTCATTCGCTTCTTGCTCATGCAGCTGTGTTTAGTAACTCGACTCTTCGGCAACTATTCACCGAACTGTACGGAAAAGACCGAGGTCATTCTATGAATCATTTGTGGAGGGACACAGTCCCTGACCCTCAAATCCTACGGCTGGCGGACGAAAGTCAATTTTCCGACATCCCTCGTGATCGAACGGAAGCGTCTGGGAGTTCCTGCAAAGTTGGTCTGACACTGGACCAAGAGGATCAAGAGTTATTCTGCGTGGGGCGAACGCTCGGTATACAGGACTATGTGGGTCAACGAGTGTGCCAAATCGCTTCGATCGTTCGAAATTTATCGTTTATAAACGAGAACGTCGTCATAATGGGGAATGATATCACCTTTTTGAGGTTCGTTCTACTTTGTTGTGGTTCGAAATGGAACGGGCTGCAGCAACTTGGCTGGGACATGTTGGGCAACATTGCATCGGAAGTGTCCGTTCAGTCGCCTTTAATTGATGATGTTTTAAATATGGCGTCGAAAGGGTTACTGTCTCAAGATCGGGCGATAATTATAGCTTCGTTAGAAATTTTGAATAAACTGGctcaatgtgaaaaaaatgaggATATTCTTCTTCGATCCATGCGACAAGAGATTTACGATAGGATATGTTCTTTTTTAACCCTTCACGACATAATGTTGTTGGTTTACACTCTGGAGTGCCTTAATTCGATCAGTTCCCTCGGGGAAAAGGCGTGTAATGCAATACTTAGGGTTCGAGGTTCTTTGGATGTTTTAGTTTCTTTAATAACAGTCGAGGCTCAAAGCTATGGCCCTAAAGCTTGCATTCAAATGAGGGTAGTGGAAACTGTTTCTGGGAGCACTACCAGTGGTATCGTCTGTCAACCATCGTCCCAAGCAACCACCGTCACGTCCTCCTCGTCTTCTGTAGTTGTCACTAGTACCACAAATACCTCTTCCGTGAGCAGCCTGAGCACCACAATGCTCACGGGTGTGTCAACGAGTAGCCTCATCAGTTCAACGACTACACCCTTAACCCAAACCGTTCTTACATCCGTTGCTACTTCAACAACTTCAGTTCAACCATCAACAGGAGCACAACAAATTATTTCCAACTTTGTAGCTCCCGTGACACCTGTAGTGGCAAACGCCGCTCATGCCACTCAACAAGTGGCTCAAGAAAATGAACAATTTGCTTTGGCTTGGCTTCGAAGTACTTTCGAACCTCAAAACGGTGCAATGATTGAACAAGCTGAACTTTACAAGCAGTACATTAATTACTGTGCAAAAATTGGACGCCGTGGAGTTATCGCTCCGTTACATTTTCCTAGATGTGTGAGGTCTGTCTTCGGAGGTACCATCGGGCCTAAGCTTGTTACGTCAGGGGAAAGTACACAAAAACATTTTTACGAAGGCATACAGCTTAGAGCGAAACCTTTGATACCACAAGTGTGTCAACCTCAAACCACTTCAGTGTCGACAGCGACAGTCACTATTCCACCGAGCCCGGCTCCGAGCACTCCTTCGCCTATTTTAAAGGCGCAGTTAAGCGCTCCCCCAAAACCGACGTCAACGCCCAACTCAATGGCTTTAAAgGTGCAGGTTGGGGGAGGGGCAAGCCCACCCCAAGGAGACCCTGGTACAACGTCTCTAATAAAAACTCTTCTTGCTAGCAAGGTAACCCaaagacaacaacaacaaaagttgCTTCTCCAGCAACAGTCCTCCCCTCCAAAAACGGTGCCACCTCCGACGGCCACCGCGTCATTTGGAGCTCAAACAAGCCCCATTGAAGATTCCCTACTGGTGAACCCTTCAAAAATCACTTCGACCACCACCACTTATCAGGCTAAACCTGGTTTACCGTGTAAAGTGAACGGAGTTCGTAGTGGCAATGAGGCTACGGAAAAAATTGAAGTTCTCCAACCCAATGGTTCTCAAATTTTCTCTCCTAGTAGTATTGACAGCATCAATAGGCCGCCTCCTCTAGCTCCCCTGAGCACAAAATTTAATAGCGTTAATTCTGTAGCCGTAACAACGGACGTAACTGGACCCAATCCAATCAATTCTGGGACAAAGGAAATGGGCGCTGGAACTCgcGACGACATCGGCGACAACTCCATGGGCTCATTGGACGGTTTCCTACTAAATGGTATCCCTAGCTCAATCGATTCCAGTGAGACGACGAACATTCGAGAAACTCCCACTAAAAGTGTTATGCTGGCCGATCTACTTGAAAAGAACATCGATAAGAATGAGCCTCCCGTGTTGAATGGGTCGCTAAGAATAGGGGACAAAGGTCTAGAGCTGATACAGAGTACAACGGAATTAGTTGATGAGAAACCATCgcttcctccacctcctcctctTGCCAACATATTGCCGGATGATAATCGGAATATGAATGGAGTAACAGAGGCGCCCACGATTAAACAAGAAGACGTAAAACCGTCTAGTGACTCTCTTAAAAGGCCAGCTGAAGGTGGCGATGAAGAATGTTCTGACGCTAAAAAGCCACATTTAAATGGGGAAGTCAAGGAGGAACCTCTTGAAGAATGTAACGTGTCGTCAACTGCAGCAAACTTATACGCGGCGTTTGCAGCTGACGCTCTAGAAGACGAGCCACTCGATGAATTGCCCCCTCAACCCGTTATTATCGCGCCAACCCAGCCACGGCAGATTCTGGTCGCAGCTGGAGGTCAATTAGCGCAACGGGTCGTCGTAGGTGGCCAACATTATGTTGTTGCACAGTCTCAGGCAGCTCTGGTCCAGGGGCAAACTCAGACAGTGCTCGTAGCTCAGACTCCTCAGCAGCAAGGCACTACCGCCAAAACAATCATTATATTACAGCCTCAGACTGTCGCCACCGCGTCTCCACAGCCTCAGTCCAAGGTCATTGTCCAGAGGCTTCAATCACCTCCTCCTGTCGTTCCTCCACACCCTCCCCCTCTTCCATCTTCACCAATGTTGACGGCAACTCAGTCCACCATTGCCGCACCCATTGTTCGGACTATCACGCCCAGTAAACCAACTCcaccacctcctcctcctcctccaacaCCCTCACCCACCTCTGTAATCACCGCGCATAAAAATTTCAAAGTCATCAAACCCACAACGTCGACAACCGTGACAACAAATTCCGTCGCCGTGTCTACGTCGACTCACTCGCAAACCACTACCGTTCAAGCGTCGAGTCCCGCGATACCCTCAGTTCCCGCACCATGTGCAACTCCCGTCACCATCACAACTCCATCCGTCACGTCAGTGTCTGTCGCCACGACGAATTCATCAACTCAAGTGGTTATTCCATCGACGTCGAATCAGTTGACGTCCAAGAGCCCTGTCGAACAACAGGGTCATTTCCTATGCGAGTGGAGAGGATGTATGAGAAATTTCAAATCCGGACACGAAGTTTATATGCATGCCTGTGAAGCTCACTGTCCGCAAGGCAGTCAAGAGATACAGTGCTTGTGGGAAAGATGTGACGCAATGAAGAGAAAGAGGTTTTCTCTCATGACTCATCTATACGATAAACACTGTAACACCGACGTTATGAGAATGATGGCGGTCAGAAGGAAACAATTGTCCGTGACCGGGCGGAGTGAGATACCTGCCCCAAGTCCGGCCACCCCtcatcctggctacgcgcccaACGCAGCTTTCCACGCGATTAAGCGACACGCTTTGGAATTCGTAAATCCCAAAGAATTACAGCAAAGACCTGCAAAGCCTGGTCCGATGCCTGCCCCAGTTCAAGTTGAACAGGACGACAACGAAGGTCCTGTAACCAAAAGTATAAGGCTAACAGCTGCAATGATCCTTCGCAACCTAGTCATTTATTCAACCAACGGAAGACGGCATCTTACTCGGTATGAAGCTCATTTGGCTAGCGTGGCCCTCAGCAACGTAGAATCTTCTAGAACCATCGCTCACGTTCTGTACGATATGAGTCAGTCGAGGTGA
- Protein Sequence
- MALLNKDPSTYEKEKERFLQELTHFHETRGTPSRRPPKINGYEIDLCMLYNLVTSRGGWVKVNSRNEWDEILSDFDLPKRCVNSSVALKQIYLRYLDRYEKIHFLGEVGERGADDDEDSRHRRWSARSLHSVPLTYNHAQHLVNESLREYNGLSVDLYKPTEYEKLALSLISPLPNEQDFAINVCTLLSNEGKHSLKLEKHPRLLHSLLAHAAVFSNSTLRQLFTELYGKDRGHSMNHLWRDTVPDPQILRLADESQFSDIPRDRTEASGSSCKVGLTLDQEDQELFCVGRTLGIQDYVGQRVCQIASIVRNLSFINENVVIMGNDITFLRFVLLCCGSKWNGLQQLGWDMLGNIASEVSVQSPLIDDVLNMASKGLLSQDRAIIIASLEILNKLAQCEKNEDILLRSMRQEIYDRICSFLTLHDIMLLVYTLECLNSISSLGEKACNAILRVRGSLDVLVSLITVEAQSYGPKACIQMRVVETVSGSTTSGIVCQPSSQATTVTSSSSSVVVTSTTNTSSVSSLSTTMLTGVSTSSLISSTTTPLTQTVLTSVATSTTSVQPSTGAQQIISNFVAPVTPVVANAAHATQQVAQENEQFALAWLRSTFEPQNGAMIEQAELYKQYINYCAKIGRRGVIAPLHFPRCVRSVFGGTIGPKLVTSGESTQKHFYEGIQLRAKPLIPQVCQPQTTSVSTATVTIPPSPAPSTPSPILKAQLSAPPKPTSTPNSMALKVQVGGGASPPQGDPGTTSLIKTLLASKVTQRQQQQKLLLQQQSSPPKTVPPPTATASFGAQTSPIEDSLLVNPSKITSTTTTYQAKPGLPCKVNGVRSGNEATEKIEVLQPNGSQIFSPSSIDSINRPPPLAPLSTKFNSVNSVAVTTDVTGPNPINSGTKEMGAGTRDDIGDNSMGSLDGFLLNGIPSSIDSSETTNIRETPTKSVMLADLLEKNIDKNEPPVLNGSLRIGDKGLELIQSTTELVDEKPSLPPPPPLANILPDDNRNMNGVTEAPTIKQEDVKPSSDSLKRPAEGGDEECSDAKKPHLNGEVKEEPLEECNVSSTAANLYAAFAADALEDEPLDELPPQPVIIAPTQPRQILVAAGGQLAQRVVVGGQHYVVAQSQAALVQGQTQTVLVAQTPQQQGTTAKTIIILQPQTVATASPQPQSKVIVQRLQSPPPVVPPHPPPLPSSPMLTATQSTIAAPIVRTITPSKPTPPPPPPPPTPSPTSVITAHKNFKVIKPTTSTTVTTNSVAVSTSTHSQTTTVQASSPAIPSVPAPCATPVTITTPSVTSVSVATTNSSTQVVIPSTSNQLTSKSPVEQQGHFLCEWRGCMRNFKSGHEVYMHACEAHCPQGSQEIQCLWERCDAMKRKRFSLMTHLYDKHCNTDVMRMMAVRRKQLSVTGRSEIPAPSPATPHPGYAPNAAFHAIKRHALEFVNPKELQQRPAKPGPMPAPVQVEQDDNEGPVTKSIRLTAAMILRNLVIYSTNGRRHLTRYEAHLASVALSNVESSRTIAHVLYDMSQSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00372670;
- 90% Identity
- iTF_00372670;
- 80% Identity
- iTF_00372670;