Ccas044437.1
Basic Information
- Insect
- Coronaproctus castanopsis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_032883995.1
- Location
- CM065054.1:61018889-61059125[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.28 1.5e+04 -3.5 1.5 248 279 73 106 63 115 0.47 2 4 8.6e-79 4.6e-74 251.0 24.9 1 300 145 471 145 471 0.91 3 4 0.0098 5.2e+02 1.2 3.5 121 172 470 521 469 528 0.90 4 4 0.033 1.8e+03 -0.5 0.4 213 239 521 546 512 546 0.77
Sequence Information
- Coding Sequence
- atgaatcatcatcatcattatcaaccGGACGATCAAACACCTGTTGGAAGTCCTTCGAAGTTTATCAACGGTTATCGCGATTTACATTTGAACGACGATTATATCCAAAATGAGGACGACGAATATATACCACCTTTACCGACTTCTCCGCCACCGACTTTATTCGACGAATATGACTTCGCTTGTCTAGATGAACAGGATGACGATAATGTCAGTGAGCAGGACAgtttcagtaataataataataataataataataataatactgacgaatatgataatgataatgagaCCTTGCTGAATAATGTCGACAATGAAGTGGTCCGTATTGTACAAAAGATGAACGGGCACGaggaaatttataaagaaagcgATTTAAACAAAGACGACCGTGAATACGTCCTAGAATTTTTGGACCATGCAAATTCCCAGGCTGAATGTAAACTGGCTGCTCGTCGACAAGCAAGAGCTGAAGCTCGTGATATCAGAATACGAGAATTGGAAAGAATGCAAAAGATGGCCGATGAAAATGCCGATAAAATCTATGACGCGTACAATGCCGATGTAGCTAATAAGATTAATCGTGTAAATGGTGGAGGACCGAATGGAAGGAATATTTCTTTGAATTCGTCTCCCATTAGTAACAACAGTCGAAGAAGCTCGGAGGATTCTTTAGAGGAAAGTTTTAATTATCGGGATatgaagTTGGAAATAAAAGAAGCGgaagaaaaatttcgaaaagcGATGATACAAAATGCTCAATTAGATAATGAAAAGGCCGCGGCTACATATCAAGTAGAATTATATTTAGATAAGCACGAAGAACTGGAAGAACGATTTTCCTTACtccaaCtagattataaagaaaaatcgCGGGAATATGAACAGTTGAAAAGATTGTTTACCCAACAGAATAAtgaattaactttttataaatcAGAATTAGAAGAACGAGACAAATTAATACAGGAAACTGGATTGGTATTACTATCGGTTGATGAACATTTAGAAAATGACGATAACAACGGCAGCGTCGATTGCGTTAACGGAGACTACGCTAAAGAACAAAATGACGTACTAGTTAACGGTGGTTGCGAACAGACGACCAAGTCGTTATCGAAAAAAGTATTAGTGTCCGCGACATCGGCCGGATTATTATCCGATACATTCGTCGGTAGTTCTTTAGaTGTCAAGTTGAAACAATTTGCCCAAGAACGTAAAGATTTGCTAGAACAACTTTCAAAAGTTAACTTATTGCTAGAAGAAGAACGGAAAAGATTTCGCAGCGGAAGTAGCGGTAACATTATGAACGGGTCTTATATAGAAGATTGCGAAGATATAcaaaaAGAAACAAGTCGTTTAGCCGgcgattataaatttaaatggcAAAAAGCCGAACAGGATATATCAACGTTGCAAGCCAATGTAGCACGTTTAGAAAGTCAGGTTATTAGGTACAAGTCGGCAGCCGAGACGTCAGAAAAAGTTGAAGACGAGCTAAAAGTGGAAAAACGAAAACTACAACGAGAATTACGCGAAGCTCAATGTAGAATCGAAGAGTTAGAAACAACGAACACGCATTTACAACGAAGATTGGATAAACTGAAGAACGCTAAATCGGCCCTATTAAAAGAAATCTAg
- Protein Sequence
- MNHHHHYQPDDQTPVGSPSKFINGYRDLHLNDDYIQNEDDEYIPPLPTSPPPTLFDEYDFACLDEQDDDNVSEQDSFSNNNNNNNNNNTDEYDNDNETLLNNVDNEVVRIVQKMNGHEEIYKESDLNKDDREYVLEFLDHANSQAECKLAARRQARAEARDIRIRELERMQKMADENADKIYDAYNADVANKINRVNGGGPNGRNISLNSSPISNNSRRSSEDSLEESFNYRDMKLEIKEAEEKFRKAMIQNAQLDNEKAAATYQVELYLDKHEELEERFSLLQLDYKEKSREYEQLKRLFTQQNNELTFYKSELEERDKLIQETGLVLLSVDEHLENDDNNGSVDCVNGDYAKEQNDVLVNGGCEQTTKSLSKKVLVSATSAGLLSDTFVGSSLDVKLKQFAQERKDLLEQLSKVNLLLEEERKRFRSGSSGNIMNGSYIEDCEDIQKETSRLAGDYKFKWQKAEQDISTLQANVARLESQVIRYKSAAETSEKVEDELKVEKRKLQRELREAQCRIEELETTNTHLQRRLDKLKNAKSALLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -