Basic Information

Insect: Cordilura impudica
Gene Symbol: -
Assembly: GCA_963682025.1
Location: OY821519.1:29916937-29918579[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0013 0.4 13.9 2.9 1 23 220 242 220 242 0.98

2 9 0.0033 1 12.7 1.1 1 23 248 272 248 272 0.96

3 9 0.00033 0.1 15.8 3.2 1 23 279 304 279 305 0.97

4 9 0.00045 0.14 15.4 3.3 1 23 313 335 313 335 0.95

5 9 5.4e-06 0.0017 21.4 1.5 1 23 343 367 343 367 0.97

6 9 0.85 2.6e+02 5.1 2.9 1 20 373 392 373 395 0.92

7 9 4.7e-05 0.014 18.5 0.4 2 23 402 424 401 424 0.95

8 9 0.018 5.4 10.4 1.1 3 23 432 452 430 452 0.97

9 9 3.8e-07 0.00011 25.1 0.5 1 23 458 480 458 480 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0013	0.4	13.9	2.9	1	23	220	242	220	242	0.98
2	9	0.0033	1	12.7	1.1	1	23	248	272	248	272	0.96
3	9	0.00033	0.1	15.8	3.2	1	23	279	304	279	305	0.97
4	9	0.00045	0.14	15.4	3.3	1	23	313	335	313	335	0.95
5	9	5.4e-06	0.0017	21.4	1.5	1	23	343	367	343	367	0.97
6	9	0.85	2.6e+02	5.1	2.9	1	20	373	392	373	395	0.92
7	9	4.7e-05	0.014	18.5	0.4	2	23	402	424	401	424	0.95
8	9	0.018	5.4	10.4	1.1	3	23	432	452	430	452	0.97
9	9	3.8e-07	0.00011	25.1	0.5	1	23	458	480	458	480	0.98

Sequence Information

Coding Sequence: atgcCAAAGGATTTAAGAGATCAATTATGCAGAACCTGTTTAACTTCGTTGTCGAAAAATCATtcaatatttcatatatttactACGGAGGATTTGgccaaaaaaataatgttatgtgCCTCCGTAGCCGTGGAATTATCGGATGAATATCCCCAGCAAGTGTGCTCAGAATGTTATAAACAAATTATGCTATTTTATGACTTCCAACAAATGTGTGTTAACTCCTTGGATAAGTTTAACGAACTTTTGAAAACTCCCGAGAagttaaaagaatttaatataaacaCAGCTGAGGAAACCGATTTGGAACTAGAAGAGTTGATGGAGGCGGCTATAAGTGGTCACCCTgtagtaaataaaaatgtaaaaaaaacggcTACAAAAAGAAAAAGAGGACGGCCATCTAAGAAAAtagttgaaaaaaatgaaaacttgggATATGTAACAAAAAAGGATTGCAATACAGCTAATACTACGGTAGAAGTAAATGAAAGTCCTcaaagcaatttaaaaaatgaaagtgaGGTTATATTAAAAGTTAAGTTTGTgacagaaaatttaaataataatgcaAAGAAAGCAGGCATATTAAATGAAGAATtgttaTGTTCAGATTCTGTGAGCGACAATGAGACAAGCACTACTCAAAAACTTCCCCATCAATGTGATATCTGTAACGAAAGTTTTGATGTTCTACATCGTTTGCAAGCTCACAAAAGGCAACATAATGGTATTCCTGTTTATCGCTGTGCATTTGAAGGTTGTGAATGTTCCTTtattaattggcaaaatttcaATGAACATGTTAAGGAACATAAGGACGCACACGAATTATACAAGTGCGACGTTGAGAACTgtgaaaaattctataaaaataaatccaCCTTAATTGAACATAAGCGTAAATTACACCATCAGGGACCAGAATTAAAATCGCATATGTGTGAAATATGTGGTAAAGTTTTCAAATCCTCGGGCGCTTTAAATTGTCATCGTTTTACCCATATTGATCGTACACAATATCCTTTTGTTTGTAAAGAACCTGGTTGCACAAAAagattcaccagaaaagacaaGTTAAAAATCCATCAAATGCGTCATGCTGGCATTAAGAGTTTCATTTGTCCCTATTGCGACATGCGTAAGACTACACTCAATGAATTAAAGAATCACTTCAACTGTCATACTCTGGAAAAGACTTGGCCTTGTCGTGTTTGCCCTAAAGTTTGTAATAATGCTGGTAACTTAAACAAGCATGTTAGGAATATGCATGAAAGAGCCAAAGATTTTGGTTGTCAATTTTGTGATCGTACTTTTGCACAAGCCAATACCAGAAAATATCATGAAATGACACATACGGGTGAAAGACCCCATCAGTGCAAGGAATGTGGTAAACGTTTTGTACAACCGGCTTCGTTATGGGCTCACACGAAGATTCATTTAAGGAAAAAAGCTAAAAGTTCAAAAAATGATTGTCCCGATATTAATGATCACAAAGCTGAACAGAACTCAAAAGAAAGGGAATCTTCTGTAGAAACAGAGGCTTTGGTATCTGCTACTTTAAGTGATGATTGTTAA
Protein Sequence: MPKDLRDQLCRTCLTSLSKNHSIFHIFTTEDLAKKIMLCASVAVELSDEYPQQVCSECYKQIMLFYDFQQMCVNSLDKFNELLKTPEKLKEFNINTAEETDLELEELMEAAISGHPVVNKNVKKTATKRKRGRPSKKIVEKNENLGYVTKKDCNTANTTVEVNESPQSNLKNESEVILKVKFVTENLNNNAKKAGILNEELLCSDSVSDNETSTTQKLPHQCDICNESFDVLHRLQAHKRQHNGIPVYRCAFEGCECSFINWQNFNEHVKEHKDAHELYKCDVENCEKFYKNKSTLIEHKRKLHHQGPELKSHMCEICGKVFKSSGALNCHRFTHIDRTQYPFVCKEPGCTKRFTRKDKLKIHQMRHAGIKSFICPYCDMRKTTLNELKNHFNCHTLEKTWPCRVCPKVCNNAGNLNKHVRNMHERAKDFGCQFCDRTFAQANTRKYHEMTHTGERPHQCKECGKRFVQPASLWAHTKIHLRKKAKSSKNDCPDINDHKAEQNSKERESSVETEALVSATLSDDC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00371495;
90% Identity: -
80% Identity: -