Cimp059345.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821519.1:29944681-29946236[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00019 0.06 16.5 5.3 1 23 222 244 222 244 0.98 2 9 0.00019 0.059 16.6 1.7 1 23 250 274 250 274 0.98 3 9 0.00013 0.039 17.1 2.1 1 23 281 306 281 307 0.97 4 9 0.00013 0.039 17.1 0.4 1 23 315 337 315 337 0.95 5 9 0.00047 0.14 15.3 0.8 1 23 345 369 345 369 0.97 6 9 2e-06 0.00061 22.8 0.5 1 23 375 397 375 397 0.97 7 9 2.6e-05 0.0078 19.3 0.2 2 23 404 426 403 426 0.95 8 9 0.043 13 9.2 1.8 1 23 432 454 432 454 0.97 9 9 8e-07 0.00025 24.0 0.4 1 22 460 481 460 481 0.96
Sequence Information
- Coding Sequence
- atgcCAAAGGATTTAAGAGATCAATACTGCAGAACCTGTTTAACTTCATTATCAAAAAATCATTCAATATTGGAAACATTTCATATATTTACTACGGAGGATTTGgccaaaaaaataatgttatgtgCCTCCGTAGCCGTGGAATTATCGGATGAATATCCCCAGCAAGTGTGCTCAGAATGTTATAAACAAATAATGCTATTTTATGACTTCCAACAAATGTGTGTTAAATCCTTGGATAAGTTTAACGAACTTTTGAAAACTCCCGAGAAGTTGAAAGAATATAATATAAACATAGCTGGGGAAAACTATGTGGAACAAAAAGAGTTGATGGATGCTGCAATATGTGGTCACCCTctagtaaataaaaatgtaaaaaaaacggcTACAAAAAGAAAAAGAGGACGGCCATCTAAGAAAATAGctgatgaaaatgaaaacttgGGATATGTTACTAAAAAAGATTGCAATACAGCTAATACTACGGTAGAAATAAATGAAAGTCCTCAAAGCAATTTAAGAAGTGAAAGTGAGGTTATATTAGAAGTTAAGTTTGCgacagaaaatttaaataatgcaaAGAAAGCTGGCGTAATAAATGAAGAGTTGttatGCTCAGATTCTGTAAGCGATAATGAAACAAACATTACTCAAAAACTTCCCCATAAATGTGATATCTGTAACGAAAGTTTTGATAATAAACATCGTTTGCGAGCTCACAAAAGACAACATTATGGTCTTCGTCTATATCGCTGTCCATTTGAAGGTTGTGAATTTTCCTTTATTCATTGGCAAAATTTCAATAAACATGTTAAGGAACATAAGGACGCAGACGAATTATACAAGTGCGACGTTGAGAACTGCgaaagaatttttataaataaatccgCCTTATATCGACATAAGCGTAAATTACACCATCAGGGACCAGAATTAAAATCGCATATGTGTGAAATATGCGGTAAAGTTTTCAAACTCCCGGCTGTTTTAAATAATCATCGTTTTATCCATATTGATCGTACACAATATCCTTTTGTTTGTAAAGAACCTGGTTGCACACAAAGATTTTCCAGAAAAGAGAGGTTACAAACACATGCAATGCGTCATGCTGGCATTAAGAATTTCATTTGTCCCTATTGTGGCAAGCGTACGACTACACGCGGTGAATTAAAGATTCACCTCAATTATCATACGCTGGAAAAGACTTGGCCTTGTCGTGTTTGCTCTAAAGTTTTTTATAGTCCTGGTAACTTAAAGATGCATATTAAGAATATGCATGAAAGAGCCAAAGATTTTGATTGTCGGTTTTGTGAACGTACTTTTGCACAAGCCAATACCAGAAAATATCACGAAATGACACATACGGGTGAAAGACCCCATCAGTGCAAGGAATGTGGTAAACGTTTTGTGCAACCGGCTGCGTTAAGGAATCATTTAAGGAAAAAAGCTAAAAGTACAAAAGATGATTGCCCCGAGACCAATGATCACTAA
- Protein Sequence
- MPKDLRDQYCRTCLTSLSKNHSILETFHIFTTEDLAKKIMLCASVAVELSDEYPQQVCSECYKQIMLFYDFQQMCVKSLDKFNELLKTPEKLKEYNINIAGENYVEQKELMDAAICGHPLVNKNVKKTATKRKRGRPSKKIADENENLGYVTKKDCNTANTTVEINESPQSNLRSESEVILEVKFATENLNNAKKAGVINEELLCSDSVSDNETNITQKLPHKCDICNESFDNKHRLRAHKRQHYGLRLYRCPFEGCEFSFIHWQNFNKHVKEHKDADELYKCDVENCERIFINKSALYRHKRKLHHQGPELKSHMCEICGKVFKLPAVLNNHRFIHIDRTQYPFVCKEPGCTQRFSRKERLQTHAMRHAGIKNFICPYCGKRTTTRGELKIHLNYHTLEKTWPCRVCSKVFYSPGNLKMHIKNMHERAKDFDCRFCERTFAQANTRKYHEMTHTGERPHQCKECGKRFVQPAALRNHLRKKAKSTKDDCPETNDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00371490; iTF_00371561; iTF_00371531; iTF_00371539;
- 90% Identity
- -
- 80% Identity
- -