Cimp027835.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- MBD-R2
- Assembly
- GCA_963682025.1
- Location
- OY821517.1:306566991-306575757[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-23 4.4e-19 70.6 0.1 3 76 418 489 416 490 0.93 2 2 0.95 1.7e+04 -1.8 0.0 43 63 920 938 914 950 0.82
Sequence Information
- Coding Sequence
- atgggTCGTCGGTGTTGTATAGCCGGCTGTTCATCTACTTCACGCCTACCCGAACATCATGGTGTAACTTATCATTCATTTCCTGTAGATGAAAATACGCGATCTATTTGGATACGTAACACAAAATTAAGTGCTGATCGCCATATTACTAAAAGTGTTTTAGTATGTTCTCGTCACTTTCGACGTGCCGACTTTCAGCCACAACGTAGTGGAAAATATCTATTAAAGCAAAAAGTCTTTCCAACAGTATTTCCTTGGGGTAAAATTGAGGCAAAACAGATAGAGGAAGATTTGGAGTTTTTAAATACATCCGGAATAGCACCAGGACCCAGTGCCGTATTGACCTCGTCATCTGTGGTTGATGATGATACCAAAGCTACGGTTGCCGCAACTGTGGCACAAATAATGGCTCAGACAGCGGAATTAAATGCGGCAGCTGGTATAAAATTAGAAAACCCCGATGGAGATGAAGGGCTAGCAGAAGGTTTAGCAACTACAAGTCCAAATTCTCCTCCAGGTGTTAAATTTGAACCCGTTAGTTCTTTCAATCCAGGAGCACGTCTCGAAGCTCAGGATTTCGATGGTATTTGGCATTCAGCTCGTATAGTCGAAGTGGACAATGACGATCGtgaagttttaattaaatttgaaaaatccgGGAAAAATAAATCCACCATGGCTGGTACTGAAGAATGGATTCCCATGAATTCATCGCGTCTCCGACAAAGACAATCCACCAAGCCTATTTTGAACTTTAATTTAGAAGAGAAATGTTTAGCCAGATGGTCAGGGCCACGTAAATTTCCTGGTACGGTGAAAAAAGTTCTAGCCAACGATACGTATGAGATTTTATTCGATGAtggttatataaaaaatgttcgcGCTATACACATGAACAAAGTACAATCTGCAGTTGTAGAACCTCAAGTACTTGAAAATATACCTGAGGAGATTCCTGTGGAAACACCAACTAAAATACCAACACCATTGTCTACACCGGTGGCTGTTACAACATCTACACCTACAACTATTAAACGGCCTTCTTCTGGTCAAAGTTCAGGTTCACAACCTAAAAGACGTGCTCCCAATGGACCACGTAAAGATTGGCCCCTTTTGGATTTATCGAAACTGGATTTGTCTTCTTTAAATCTTCCTGAAATCCCAAAAGATGGCGAATGGACTTGTCATTGGGTCAACGATCAACCTATAGGTCGTGAGGGATATCTGGTGGTGGGAGAACATCGTAAACCTACCGTTGTCGTAGATGATTGGCGTTTACCAGCGGGTTGGATCAAACATATGTATCAACGTTCAAATGTTTTAGGAAAATGGGATGTTATTCTAGTTACACCCAATGGCAAACGTTTTAGATCAAAGGCTGACCTCAAGACCTATTTAGAAGAAAAGGGCCAGGTGTATAATCCAGATATATACGATTTTAGTATACATCGTCGCCGAGCTAAAGATATCAATTGTTATGCTCACACTCCTGATTATGTACCACAACAACCATTCAAATCAAAAACTGCTTTGAATACTTCATTGGACACAAGTTTTGAAGCGAAATCGGAAGCTGTAGGAACTTTAGCAACGAGCGTGCCCTCACCTTATATGGAAACCCCTATAGCGGAACCGTTGCCACCCATAGAACTGTTAACGACATCAACAACAAGTTTGTCAGCTGAAGACAAAAGTGTTACTCAAGTTGAAGCTGATTTGCCTAAACAACTTTTAGAATCGGCTGAGGTCAGTTCTACGCCTACTCCTACATCGACACCTACTGTGGGCTTAAAGGAGGAAGTTGCTGCTGCTCCAGAATGCGCTACACCACCTGTAACGGTGGTGGAAACAAAAGTCGATGATGGatttgCTCTTATTGGTGGTCTAAAGGTTCAAATCATTGACAATTTATTCCGTTGTCCCCAAGAGGGTTGTTCCAAGAATTTCCGCAAAGAAAACCATTTACAAATTCATGTCAAACATTATCATCGCAATCTTGTTAAATTACTGGGTGCTTGCCCTAAAATGCAAGAGTTAGCTGAAAAACGTACACATTCTGTGGAGCATGACCCCAATGAGCCAGTACCGAAAAACCAAATATCCAATCAGCAATTCTTTGCTAAACTACATCAACAAGATTTAGAACATACTCGGGCACATCGCAGAAGTGTAGGTGTTAGCAAACCACCCACCACCACCACAGAGCCATCTTTAGAGATAAAACCTGAGTTGACAGAGGAGAAAATTAAAGAGGAGGACGAACAGATTGCTGAAAGTTCCCTAAATGATACATCTTTAATTAATACTACCACAGCATCTAGTTCTGTTGTTGATAATTCAGTTACTACAAACACAACAGCTGATAATTCAGCCTTAACAGAAACTGCTTTGGATGATGTGCCATTAATTAAGAGATCAAAAATTTCACCTACCAAAAGGTCTGGAGCCTCGAGGAAAAGCAATCGTCAAAGAACTACTAGAAAATATCTCACAGCAGCTCAAGCTACGGCCGGTGTAGTGACTACGGTCAATGCTTCTACACCTTTACCGCTCACCGGCTTAGCAGATACAAGTTTCAGCGGTGTAGCTGAATTTGAAGAGACACGTCATTCGTTCAACGCTACTCCCGATATAAATAAAGATGTCAAGAAACGTAAATCTGGTGTCCTGCCATCCAATACACCTCTTAGCAGTGCCGATTCACCAATTACAGCCGATTCTGGTTCGAATTCCTTCCAACCAACTAACTCTACCGAGGCTGATACTATCAACCAGCCTCCTCAATACATCAAAGAAAATGGTGAACTTATTAAAATAGTCCATATGCGACAGGAGGAAATCATCAATTGCCTTTGTGGTTATTGTGAAGAAGATGGTTTAATGATACAATGTGAGCTATGTCTTTGCTGGCAACATGGCATATGCAATGGCATCGATAAAGTCTCACAAGTTCCCGATAAATATGTTTGCTATATATGTCGTAATCCTCAGAGAAGTCGTGAATCTATACGTTATAAACATGATCAAGATTGGTTATTTGAAGGCAAACTACCAGTGGCTAATTTCCATCTCACCAACAATGCACAATATACAAAACGATCAGAATATCTGAAACGTTCACATACATTGACGGGTAATCTATTGGAACTGAAGAACTATATGCACTCCTTGAAGGTTAAAATTAATATAGCCAACAATAAATGTCATCCCAAGCTGTATCTATGGGCTAAGAAATGGGATGAGGATATGGAGGGAGTGAAAAGTGAAATTAAGACAGAATTGGAAATGAACTCTAAAACTAATAATACGAATTTGATACTTACGCCCTctgcaaagaaaataaaattagaacCTAATACTCCACCACAATTGGTGCCAAATATACCACAGCCAGAAGCTCCCATCGATGCATTGGAATGCCAGCAACGTCTGTTGGAACATATTAAAATACAGCAAAAATTGGTAATGGGTCGCTTAAATGACATTGAAGCCGCCATAGATGTTTTGGAACGTGAAGATGAAATGCCCGATTTACGTGAAGCTGATTTGGGTGCTACTAAAGATGTTTTGGCTGCCTTTATTAAAGAATTGGAAACTGTCAAACATATTGCCAAGTTGAATACTTTGGAACATACCATGTTGGCTTATAAGAATCCTATTCACCCCATCAATTGA
- Protein Sequence
- MGRRCCIAGCSSTSRLPEHHGVTYHSFPVDENTRSIWIRNTKLSADRHITKSVLVCSRHFRRADFQPQRSGKYLLKQKVFPTVFPWGKIEAKQIEEDLEFLNTSGIAPGPSAVLTSSSVVDDDTKATVAATVAQIMAQTAELNAAAGIKLENPDGDEGLAEGLATTSPNSPPGVKFEPVSSFNPGARLEAQDFDGIWHSARIVEVDNDDREVLIKFEKSGKNKSTMAGTEEWIPMNSSRLRQRQSTKPILNFNLEEKCLARWSGPRKFPGTVKKVLANDTYEILFDDGYIKNVRAIHMNKVQSAVVEPQVLENIPEEIPVETPTKIPTPLSTPVAVTTSTPTTIKRPSSGQSSGSQPKRRAPNGPRKDWPLLDLSKLDLSSLNLPEIPKDGEWTCHWVNDQPIGREGYLVVGEHRKPTVVVDDWRLPAGWIKHMYQRSNVLGKWDVILVTPNGKRFRSKADLKTYLEEKGQVYNPDIYDFSIHRRRAKDINCYAHTPDYVPQQPFKSKTALNTSLDTSFEAKSEAVGTLATSVPSPYMETPIAEPLPPIELLTTSTTSLSAEDKSVTQVEADLPKQLLESAEVSSTPTPTSTPTVGLKEEVAAAPECATPPVTVVETKVDDGFALIGGLKVQIIDNLFRCPQEGCSKNFRKENHLQIHVKHYHRNLVKLLGACPKMQELAEKRTHSVEHDPNEPVPKNQISNQQFFAKLHQQDLEHTRAHRRSVGVSKPPTTTTEPSLEIKPELTEEKIKEEDEQIAESSLNDTSLINTTTASSSVVDNSVTTNTTADNSALTETALDDVPLIKRSKISPTKRSGASRKSNRQRTTRKYLTAAQATAGVVTTVNASTPLPLTGLADTSFSGVAEFEETRHSFNATPDINKDVKKRKSGVLPSNTPLSSADSPITADSGSNSFQPTNSTEADTINQPPQYIKENGELIKIVHMRQEEIINCLCGYCEEDGLMIQCELCLCWQHGICNGIDKVSQVPDKYVCYICRNPQRSRESIRYKHDQDWLFEGKLPVANFHLTNNAQYTKRSEYLKRSHTLTGNLLELKNYMHSLKVKINIANNKCHPKLYLWAKKWDEDMEGVKSEIKTELEMNSKTNNTNLILTPSAKKIKLEPNTPPQLVPNIPQPEAPIDALECQQRLLEHIKIQQKLVMGRLNDIEAAIDVLEREDEMPDLREADLGATKDVLAAFIKELETVKHIAKLNTLEHTMLAYKNPIHPIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01165527;
- 90% Identity
- iTF_00371099;
- 80% Identity
- iTF_00371099;