Cimp077112.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963682025.1
- Location
- OY821520.1:19744830-19748423[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2 1.3e+05 -10.3 23.3 34 199 8 183 3 238 0.76 2 3 2e-115 1.3e-110 372.2 27.2 1 299 277 572 277 573 0.93 3 3 0.095 6.1e+03 -1.0 3.4 218 245 599 626 576 647 0.52
Sequence Information
- Coding Sequence
- atgtcaGTAGAACGAAAATTAACTGATAAAAATATAGTGGCAAATTCGAATTCGTCTACAAAAAGTAAAAAGAACAACAATAAGagcaaaaaaatcattcaaaaaaCATTGAAGTCAAAAAGTaagaaaagtaaaaacaatactttgaacaacaataacaatactgAAGTTGCCAACGATGAAATCATCGAGGAGTTGTTTGATTTTAGTGATACTGATTTAAAAGAACTCGATacaaatgaagaaaacaacaacaaaaacagcaaCAGCTCTAATAGTGTGGTTATTAacgaaaaaataacagaaaataaattaaaggATGAAAATTTCGATGAGCTGGAGGGTAGAGTGCAACCGCaaagaaataatgaaaatgaTAACAAACAAGAACAACTACAGGTGGAAGAACTACACTCGAGTGATAACAACGATAATAACGAGcaagaaaaaaaagaattaacaCAGACAATAATGACTTTAACGACGGAGAATTTATGCGGCGGAAGTGAAGATAATAAAGAAAACGATAAAAACCAAGAACTGCAAGAAGATTTGTCAACAACTAAAGTCATAATTAATGATAATTCCACAACGACACCTATTCTGGTGGATACCATGAATAATAATGATGTTGTCATTGTAATGCCCGATTCAGAGGGTTCAGATGTAAATGACACGCCATGTTcttcaaaagacatcaagtctaAAATCAACAatattgcattaaataaagatgtGAATTATGCTGATGACAATGGCATTGTTGATGAATATGCCGAACCATATGATGAATTTTTAGTTCAATTCTTAGATGAAGCTAATCACATTGCTGAGGCAAGATTAGCAGCCAGAAGGCAGGCACGAGCGGAAGCTCGAGAAATTCGTATGAGAGAATTAGAACGCCAGCAAAAAGATCAAGAATCGAATGCCGATCGTGTATTTGATATGCATACACCGGGCATAAATTCTTTGTCACACATACGACTGGGTATTGGAAGTTCGCCCTCAGTTAGTGGCTTAATAAACTCCACACGAGGAAATTCGATGTCATCAAGACGCAGTAGTGAAGATTCACTGGAAGAGGAAGGCCGCAGTTTAAGAGATATACGCCATGAATTGAAGgacGTAGAAGAACGATTTCGCAAGGCCATGATAGCTAATGCTCAGTTAGATAATGATCGTGCATCTCAAACGTATCAAATTCAATTGCTGAAAGACAAGCTCGAAGATATGGAGGAATCTTTTTCACAATTACAGCGTGAGTGCAAGGAGAAAACACGTGATTGTAATGCGTTGAAACGTTCATTGGACAAATTGAGTGAAGAACTTAAACTCGTTCAGGGTCAGCTCAATGAGCGTGACACTTTAATAGCAGAGCAGGGTTTAGTTATTGTGGCAGTTGAAAATGAAGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTGGGCTCGGTGCAAGGATCATTAGatGTTCGACTTAAGAAATTTAGTGAGGAGAAACAACAACTTCAAGCTGAAGTCCAACAGTTGCAGGAACAATTAGAAACATATAAAAGCCAAGGTAAAGGTAGAGGAAAATGCAATTCTTCAAATGGTCCCTTAGGTTCAGACGATGATGAATATGAAGCTCAAAGAGAAGCCAATAAACTAATATcggattataaatataaattacaaaaagcTGAACAAGAAATTGCTAGTCTACAATCGAGCTTAGCACGTTCGGAAACACAAGTTATTCGCTATCGAAGCACAGCCGAAGCTGCAGAAAAGGCAGAATCTGAACTTAAAATTGAAAGAAGAAAACTACAGAGAGAGaaTCGTGAGGCAATGGAAAAACTTGAAGAATTAGAAACATCAAATAATCATCTACTGAAACGTTTGGATAAATTAAAGAATGCCAAGAGTGCTTTACTTAAGGATCTCTGA
- Protein Sequence
- MSVERKLTDKNIVANSNSSTKSKKNNNKSKKIIQKTLKSKSKKSKNNTLNNNNNTEVANDEIIEELFDFSDTDLKELDTNEENNNKNSNSSNSVVINEKITENKLKDENFDELEGRVQPQRNNENDNKQEQLQVEELHSSDNNDNNEQEKKELTQTIMTLTTENLCGGSEDNKENDKNQELQEDLSTTKVIINDNSTTTPILVDTMNNNDVVIVMPDSEGSDVNDTPCSSKDIKSKINNIALNKDVNYADDNGIVDEYAEPYDEFLVQFLDEANHIAEARLAARRQARAEAREIRMRELERQQKDQESNADRVFDMHTPGINSLSHIRLGIGSSPSVSGLINSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESFSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAVENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVQQLQEQLETYKSQGKGRGKCNSSNGPLGSDDDEYEAQREANKLISDYKYKLQKAEQEIASLQSSLARSETQVIRYRSTAEAAEKAESELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -