Cfor009284.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01000432.1:607913-611456[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.001 1.8 8.2 0.4 20 52 147 179 138 181 0.76 2 7 0.64 1.1e+03 -0.7 0.0 23 45 206 228 196 237 0.79 3 7 0.11 2e+02 1.7 0.0 21 46 232 257 229 265 0.81 4 7 0.0069 12 5.6 0.1 21 44 260 283 257 293 0.90 5 7 1.9 3.4e+03 -2.3 0.0 22 41 289 308 284 314 0.74 6 7 0.02 35 4.1 0.0 22 44 317 339 297 343 0.87 7 7 0.00068 1.2 8.8 0.0 21 44 344 367 341 375 0.89
Sequence Information
- Coding Sequence
- ATGGATGAGAAGCATATGGTTAAGGAGGAAGTAAACACATCAGATACTGAAGCTAATCCAAATAATATTAAGCAGGAGGTTCCATTTGAATTTGTTGGAATTAAAACTGAAGTTCAGAATATCTGTAGTTATAGTGGCACTAGCAATTATACTAGTTATGTTTGGAGTATGATGActgtagtaatggtggtggtggatgaagaagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtggtggtggtggtggtggtggtggtggtggtggtggtggtagtagtagtagtagtagtggtagtaGATGAGACAGAATCATCTTCTGCTGATGACTGTGTGCAGTCTTTTCAAACAGAGGTAAACAATGAAGTAAATGTGTTGGTACCAGAAGTATGTCTTCAGGAGGGACCTAAGACCAAAACAGCTACATCGAGCAAGTGCCCAATGTGTCATATTTGTGGCAAGGTGTTCAGGTGTGTTGCTGAAGTCAAGAGGCATTTACCAATACATACAGGGGAGAAACCTCACAAGTGTGAAACATGTGGTAAGGGATTCAGTGATACAGGCAACTTAAATACCCACAAATTGAAACATTCAGGTGTCAGGCcatatttatgttgtgtgtgtggaaagGGTTTCAGTACGTCTGGGAATTTAAATGCTCATACGATGACCCATACAGGAGAGAAGCCTCATGTGTGTGCAACATGTGGCAGAGGTTTTAGTAATTCTGGCAACTTAACGTATCATATTCTGACACACACTGGGGAGAAACCACATGTGTGTGATGTCTGTGGGAAGCTTTTTAGGAGACCCTCACACCTTAAACAGCATCTGGTTACACACACTGGTGAGAAAGcatttgtatgtaaaatttgtaacaaaggTTTTAAGCAGTTTCCTGCTATGAAGATGCATTCACTTACTCATACAGGTGAGAAGCGTCACGTGTGTAACGTATGTGGTAAAGGTTTCGTCCAGTCTAATAACTTAAAAACTCATGTTTTGACTCACAGTGGAGAGAAACCATACGTATGCACTGTGTGTGGTAAAAGGTTTATTCAGTCTAGTAATTTGAAGACACATTTATTGACTCATAATAAGGAAAAACGATACTTATGCACGATTTGTGGCAAAGGTTTTAATTCAGTCTCGTACTTGAAGAAGCATCGTCATACCCACACTGAATAA
- Protein Sequence
- MDEKHMVKEEVNTSDTEANPNNIKQEVPFEFVGIKTEVQNICSYSGTSNYTSYVWSMMTVVMVVVDEEVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVDETESSSADDCVQSFQTEVNNEVNVLVPEVCLQEGPKTKTATSSKCPMCHICGKVFRCVAEVKRHLPIHTGEKPHKCETCGKGFSDTGNLNTHKLKHSGVRPYLCCVCGKGFSTSGNLNAHTMTHTGEKPHVCATCGRGFSNSGNLTYHILTHTGEKPHVCDVCGKLFRRPSHLKQHLVTHTGEKAFVCKICNKGFKQFPAMKMHSLTHTGEKRHVCNVCGKGFVQSNNLKTHVLTHSGEKPYVCTVCGKRFIQSSNLKTHLLTHNKEKRYLCTICGKGFNSVSYLKKHRHTHTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370403;
- 90% Identity
- iTF_00370403;
- 80% Identity
- iTF_00370403;