Cfor011107.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01002325.1:194883-197576[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00062 1.1 8.9 0.2 21 43 108 130 90 135 0.89 2 9 0.00019 0.33 10.6 0.4 21 44 164 187 158 195 0.86 3 9 0.37 6.5e+02 0.0 0.4 23 44 223 244 219 252 0.86 4 9 0.00079 1.4 8.6 0.9 23 44 251 272 245 279 0.88 5 9 0.31 5.6e+02 0.3 0.0 21 46 277 301 274 305 0.84 6 9 0.083 1.5e+02 2.1 0.1 21 45 305 329 302 338 0.84 7 9 0.00086 1.5 8.5 0.4 21 44 361 384 354 392 0.80 8 9 0.94 1.7e+03 -1.3 0.4 21 33 389 401 382 416 0.72 9 9 0.00072 1.3 8.7 0.1 21 43 417 439 407 443 0.90
Sequence Information
- Coding Sequence
- ATGGAGGTGATGCTTATTGCATTGCTGGATATGAAAGTAGCGGAACATTCTGAACAAAGATCAGCATGTACATATTGGAGAGCATCCTCCCTAGTTCTGCTCAAAAGCAGGTCCATACAAACAGTGACCACGCTGAATGAACCGACACATGGTGCAGGACACCCACAGTTCTGTGACATTACTAGTGAATCATTCAGTGAAAAGAGTGACCTGAAGAAACATGAACACATACATAGTGGAGGACATTCTTCTTTCTGTGATCTGTGTAATAAATCGTTCAGTCATAACAGTCCTCTTAAGAGACATAAAATAGTACATAGTGGAGAGCGTCCTCACTCCTGTGACATGTGTAATAAAACATTCAGGTACGAGAGAAATCTCAAAAGTCACAGACGCACGCATAATGGAGAGCATCTTTAttgctgtgatgtgtgtggtaAATTATTCAGTTACCCCAATAGTCTTGTGATACATAAACGCCTGCATAGTGGAGAGCGTCCTTATTGCTgcgatgtgtgtaataaattattccGTCAGTCAAGTGGTCTCAAGAAACATGAACGCATACATAGTGCAGAACGTCATGATTATTGCTGTCTggtatgtaataaattattttgtgaccAGAGTGGTCTGAAGAAACATGAACTCATACATACTGGTGGTCGTCCTTATtcctgtgttgtgtgtaataggtcatttaataaaaacagtacTCTTAAGAGACACAGGCGCGTACATATTGGACAGCGTCCTTATCCATGTGACTTGTGTTACAAATCATTTAGTCACCAGAGGAGTCTTAGGAGGCATGAACATGTACATAGAGGAGAGTTTCCTTATTGCTGTAAGATGTGTGGTATGTCATTCAGTCAGAGTAGTTCTTTCAAGATGCATGAACTTGTACATAAAGGAGAGCGTCCATATTCGTGTGACATGTGTAATAGGTCGTTCAGTCTTGAGAAGAGTTTGAAAAGACATAAGCACGTGCATGGTGGACAGCATCCGTATGTCTGTGATGTATGCAATAAATCGTTCAGTTATCGCAGTAGGCTGATTACACACAAACGCATTCATAGTGAAGAACGTCCTTATTCTTGTGATGTATGTTATAAAGTGTTCAGTGTACAGAGCCATCTCGTGAGACACAAACGTGTACACAGTGGAGAGCGTCCTTATTGCTGCGacgtgtgtaataaatcattcagtGAATGGAGTAGTCTGAAGGCACACAAACGCATACATACCGGAGAGCGTCCTTTTTCGTGTAgcgtgtgtaataagtcattcaatAGCAGTAGTAACCTCAAGAGACACGAACGCACACATAGTGGATAG
- Protein Sequence
- MEVMLIALLDMKVAEHSEQRSACTYWRASSLVLLKSRSIQTVTTLNEPTHGAGHPQFCDITSESFSEKSDLKKHEHIHSGGHSSFCDLCNKSFSHNSPLKRHKIVHSGERPHSCDMCNKTFRYERNLKSHRRTHNGEHLYCCDVCGKLFSYPNSLVIHKRLHSGERPYCCDVCNKLFRQSSGLKKHERIHSAERHDYCCLVCNKLFCDQSGLKKHELIHTGGRPYSCVVCNRSFNKNSTLKRHRRVHIGQRPYPCDLCYKSFSHQRSLRRHEHVHRGEFPYCCKMCGMSFSQSSSFKMHELVHKGERPYSCDMCNRSFSLEKSLKRHKHVHGGQHPYVCDVCNKSFSYRSRLITHKRIHSEERPYSCDVCYKVFSVQSHLVRHKRVHSGERPYCCDVCNKSFSEWSSLKAHKRIHTGERPFSCSVCNKSFNSSSNLKRHERTHSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370372;
- 90% Identity
- iTF_00370372;
- 80% Identity
- iTF_00370372;