Cfor000377.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01006491.1:320-10170[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.087 1.5e+02 2.1 0.0 21 30 210 219 206 242 0.76 2 7 1.6 2.9e+03 -2.0 0.0 22 44 266 288 263 291 0.80 3 7 0.015 26 4.5 0.0 21 52 293 324 279 326 0.84 4 7 0.3 5.4e+02 0.3 0.0 21 44 321 344 318 348 0.86 5 7 0.01 19 5.0 0.0 21 45 349 373 341 382 0.86 6 7 0.24 4.3e+02 0.6 0.0 21 44 377 400 373 404 0.88 7 7 0.00021 0.38 10.4 0.0 21 51 405 435 401 437 0.91
Sequence Information
- Coding Sequence
- AGACGTGTGATGTCATACGAAGAGGAAATTCTTAAGGCAGATGAATTGGGCAAGGAAGACTCTATATTGGAACCAGAAGTTATTGTAACAGTAAAAGAAGAGGTTAAGGATGGAGAAGATGGCGGTAATTCTGTTATTACAACCTCACGCGATAATGCCTTATCTTCTGATGAAAACTTTGAGTTTGTGGTGGTGAAGAATGAACCAGAGGATAGTGTTTCTGGTGGGGAGGAGGACAGTATAAGTGTCGAAATAACAGAAAGGAATGCCTTTGGTGATTCAGCACAAGGATTAATATTTCCAGGAGAGAAGACAAGGCGTAAGGATGAACGATTTAAATCTGGTAAAGGCCAGTCTGTTACACGAAGAATGGTAGGAACTTCAGAAATTCGTGGTGGAAGTCAGCAGACTCCACCTCATACAATTCAGGAACCACTGGCTGGCCCTTCAACCAGTGGAGCTGACAAAATTGTACCTGTTACTTCACAAAGTGACATCAAGCCTGTTGGAATGCATAAATCAAGCAGTATTGGACTTCAGAGGACAGTTGGCAAATTTATATGCAAACACTGTGGCAATATCTTTGAGACATTTGTTGAATTTGAACTTCATGTTAAAACTCACTTCAGTGAGAAACCATTTACGTGTCCATGTGGTAGAAGCTACATGCACAAAGGACATCTCAAGGAACATATGTTAACTCACACTGACCGGAAGCCTCACgtgtgcacacagtgtggtAAGAGTTTTGCGCACAAGGGTGACCTGACAATTCACACAAGGATTCACACTGGTGAGAAACCATATTCATGTACAGAGTGTGGGAAGAGTTTTGTTCAAGGTGGACAATTAAAAATGCACATGAGGACACATACAGGTGAGAAACCATACAGTTGTTCAGTTTGTGGAAAAAGTTTTGTGCAGAAGCACAATATGTTAGATCATATGTTCCTACATACAGGTGAAAAACCATATAGTTGTACACTCTGTGGTAGAAGTTTTGTTCAAGGTTGTCATCTGAAAGATCACATGAAAACTCATAGTGGGGAAAAGCCACATTCATGTAGCTTTTGTGGGAAAAGTTTCTTGCAGAATAGTGATTTAAGAGTTCATCTGAGAGGACATACAGGTGAGAAGCCATTCAGCTGTACTGAGTGTGGGAAGAATTTTGCTCGCAGTGGGGTTCTGAAGAGGCATATGTTGACTCACACTGGGGAAAAACCGTACAAGTGCTCCCTTTGTGGTAAAGAATACACTCAAAGTAGCAAGCTGAAGCGCCACATGATGATACAACATAATAAGAAAGAGATTGCTCCTGAGACACCAAAGGTTATTCTTCTGCCCAGTTTGTGCAGTAGAGAGGGATTGCAGCATGACAGTAATGGAGAGAGTTCAGTTTCAGATAAGAAAGACAGTAATAGCAGAGAATGTATTTTGCCTCATTGA
- Protein Sequence
- RRVMSYEEEILKADELGKEDSILEPEVIVTVKEEVKDGEDGGNSVITTSRDNALSSDENFEFVVVKNEPEDSVSGGEEDSISVEITERNAFGDSAQGLIFPGEKTRRKDERFKSGKGQSVTRRMVGTSEIRGGSQQTPPHTIQEPLAGPSTSGADKIVPVTSQSDIKPVGMHKSSSIGLQRTVGKFICKHCGNIFETFVEFELHVKTHFSEKPFTCPCGRSYMHKGHLKEHMLTHTDRKPHVCTQCGKSFAHKGDLTIHTRIHTGEKPYSCTECGKSFVQGGQLKMHMRTHTGEKPYSCSVCGKSFVQKHNMLDHMFLHTGEKPYSCTLCGRSFVQGCHLKDHMKTHSGEKPHSCSFCGKSFLQNSDLRVHLRGHTGEKPFSCTECGKNFARSGVLKRHMLTHTGEKPYKCSLCGKEYTQSSKLKRHMMIQHNKKEIAPETPKVILLPSLCSREGLQHDSNGESSVSDKKDSNSRECILPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370405; iTF_00396586;
- 90% Identity
- iTF_00370405;
- 80% Identity
- iTF_00370405;