Cfor010757.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01000417.1:1076283-1080032[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1.1 1.9e+03 -1.5 0.1 26 43 154 171 148 176 0.87 2 6 5.8e-05 0.1 12.2 0.2 4 46 242 284 239 291 0.88 3 6 0.17 3e+02 1.1 0.0 23 46 315 338 311 341 0.87 4 6 3.9e-05 0.069 12.8 0.3 7 46 327 366 322 371 0.79 5 6 0.012 22 4.8 0.1 23 46 397 420 393 423 0.89 6 6 0.00083 1.5 8.5 0.1 20 46 422 448 410 450 0.82
Sequence Information
- Coding Sequence
- ATGGATGTCATAAAATGTGAACCTGACCCTCGTGAGGAGATGTACCTGACATGTTCTCATAATGACAGTCAACAGAATGATGTAGCACAGAGTGAAGGTTCTGTGTTAATGGGAGTTTCTGTTATGAAGACTGAAAATGAGGTCATAATGGATTTTATTAAATCGGAACCACATTCACATGGTGAGCTGTATGTTACAGCTTCTCAGGGTGGAAATGAGATGATAGATGTAAAAGAGGAGGAAGACTCTGTAACAGTCCAAGCCGTGAAGGCTGAACAAGAGACTGTGAAGTTGGATGAAGAATTGGAAGACATTTCTGGTGTGCAGACTGATTTCACTAACGAGCCATGTAAGAGTGGTGCTGCTCTGAAGGAATATGAAAGGTGTGaacagaattttggaatttcCAATGATTTGTGTAGTGAAGCCAACTCTTCAGATAATAACAGACTTATTTATTCATGTGATGTTTGTAAGAATGTAGTTAGTGGTGAGAATGAACTAAAAACCCATTCAGTTTTGTGCACTAGAAAATGTCCATACACGTTTGATACCTGTAAGAACTCCTCTTGCAAGCGTAATGGTTTTGAAAGGCAACAGCATGTGTATCTTAAAGAATGTCCTCCATACCATACATGTAAGGAAAGTTGTAGTGAATGCAGTCTTGTGAATATCACAGCCGTACATGACGGACGACGTCCATACTCATGCGAGACATGTGACAAAGCATTTAAGCACCCATCTGATCTTAAAAAGCATGTTCTTGTGCACACTGGAGAACGTCCATACACATGTAATACATGTGACAAAACCTTTAATCAGACTAGTGTTCTTAAAAGACATATGCGCGTCCATACCAGAAATTTTTCCCATCGtatgtgtaagaaatgttttattagtGACTGCAGTCACCTGACAATTACAGCTGCTCATAGTGGACGACGTCCATATTTGTGTGAGATATGTGACAAAGCATTTAAGCACCCATCCGATCTTAAAACACATCTTCGGATACACACTGGAGAACGTCCATACTCATGTAACATATGTGACAAAGCCTTTAATCAAAGTAGTGTCCTTAAAAGACATATGCGTGTGCATACAGAACAACATTCATGTCATACGTGTAAGAAATGTTCTGATAGTGATTGCAGTCACCTGAAGATTACAGCTGTGCATAATGGACGACGTCCATATTTGTGTGAGATATGTGACAAAGCATTTAGGCACCCATCTGATCTTAAAAAACATCTTCGTATACATACCGGAGAACGTCCATACTCATGTAATACATGTGACAAAGCCTTTAATCAGAGTAGTGTGCTTAAAAGACATATGCGTATGCACACAGGAGAACTCACATTCTGCATATGA
- Protein Sequence
- MDVIKCEPDPREEMYLTCSHNDSQQNDVAQSEGSVLMGVSVMKTENEVIMDFIKSEPHSHGELYVTASQGGNEMIDVKEEEDSVTVQAVKAEQETVKLDEELEDISGVQTDFTNEPCKSGAALKEYERCEQNFGISNDLCSEANSSDNNRLIYSCDVCKNVVSGENELKTHSVLCTRKCPYTFDTCKNSSCKRNGFERQQHVYLKECPPYHTCKESCSECSLVNITAVHDGRRPYSCETCDKAFKHPSDLKKHVLVHTGERPYTCNTCDKTFNQTSVLKRHMRVHTRNFSHRMCKKCFISDCSHLTITAAHSGRRPYLCEICDKAFKHPSDLKTHLRIHTGERPYSCNICDKAFNQSSVLKRHMRVHTEQHSCHTCKKCSDSDCSHLKITAVHNGRRPYLCEICDKAFRHPSDLKKHLRIHTGERPYSCNTCDKAFNQSSVLKRHMRMHTGELTFCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370464;
- 90% Identity
- iTF_00370464;
- 80% Identity
- iTF_00370464;