Cfor004882.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01000101.1:297184-298635[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.11 1.9e+02 1.7 0.2 20 49 143 172 136 177 0.79 2 9 0.014 26 4.5 0.2 21 48 172 199 168 205 0.85 3 9 0.0064 11 5.7 0.1 21 44 228 251 220 260 0.86 4 9 0.11 2e+02 1.7 0.0 21 44 256 279 251 283 0.86 5 9 0.0013 2.4 7.8 0.1 12 52 274 315 270 317 0.80 6 9 0.00027 0.48 10.1 0.2 21 47 312 338 304 344 0.89 7 9 0.014 25 4.6 0.0 23 49 370 396 357 400 0.81 8 9 0.061 1.1e+02 2.5 0.0 21 43 396 418 394 422 0.88 9 9 0.00031 0.56 9.9 0.0 20 46 423 449 413 452 0.86
Sequence Information
- Coding Sequence
- ATGGATGAAATAAAACACGAACCGCATACAAAGAAAGAGAGCGCTTCAGACTTAGAAGGTGGAGAAAGTGTCTTCTCAATAACAACGCTtcttatgaaaactgaaactgaAGAGGAGTCGTGTGATAAGACGGCAAGCAAGGAATGTGTGAAGGAGGAGGTCGCTATAGAGGAACATGAAGCAGTGGACAATGGGAAACAATTAGTACATCAACAACAAAGTTTGAAGGTTGTGGAACCATCACCATCAGGAAAGTATGATACGTGTATTTACTTCCAACATGGAAATACTACAGAGACTGAAAGAATGGATGAATATTCGACACACAATTCAGAAAcaatcacaaaatataaacgtTACAAGTGTGAACTGTGTAATAAATCGTTTTCTCAAAGTGgtgcgttaaccacccaccggCGCACTCATACTGGAGAGAGACCATACTCATGTGACGTCTGTAGTAAGAAATTCACGCAAAAGGTAACCCTAGAAAATCATTGTCGTATTCACACAGGAGAAAAACCTTATATTTGCAACATATGTAACAACAGATTCTCGAAAAAGACGAACCTGAAATACCATTATCGCATACACTCTGGACTTAAACCCTATCAGTGTGACATATGCAATAAGACATTCTCATTGCGGGATCGTTTAAAGGAACATTATCGTATTCATACAGGAGAAAAACCGTACGTCTGTGACATTTGCAATAAAGCATTTTCCCAATGTGGAAATTTAGCTACCCATAAACGCACACATACGGGTGAAAAGCCGTATGGTTGTGATGTATGTAACATGACTTTCGCAGAAAGCGCTACCTTGAAGACCCATTCCCGCATCCATACTGGAGAACGGCCGTACACTTGCAACGTTTGtcagaaaacattttcaaaaaaggGCAACTTAACAAACCACCACCGCGTCCACACCGGAGAGAAACCTTATGTCTGTGAAATATGCAATAAGAGATTTTCTGAAAGTGCAAATTTGAAATATCACCTTCGGTTACACTCACAGGAAAAGGCATACAGTTGCTACATATGCAACAATCGCTATTCGGATAAAGCCGAACTCAAATATCACTATCGTTGTCACACAGAGGTAAAGCCGTATATGTGTGTCGTTTGTAATAAAAAGTTTTCTGAGAGTGTAAATCTCAAAAAACACTATCGCATACATACAGGTGAGAAAccatataaatgtgaaatttgtgataaaaaattCACTCAAAGTGGACACCTTGAGACGCACAAACGTACCCATACTGGAGAGAAACCATTCACTTGCAAcatctgtaataaaaaattctccCAGAAAGTAACTTTGAAAAGGCATGGTCGTCTGCATTCAGGCCAACTAGGGGGGCCTATGATGTCCAAATCAGATGGTTGTCATAATAACGAAGAGCCACAACATCCAGATGTTTCTAGCCACcttaattcaaaataa
- Protein Sequence
- MDEIKHEPHTKKESASDLEGGESVFSITTLLMKTETEEESCDKTASKECVKEEVAIEEHEAVDNGKQLVHQQQSLKVVEPSPSGKYDTCIYFQHGNTTETERMDEYSTHNSETITKYKRYKCELCNKSFSQSGALTTHRRTHTGERPYSCDVCSKKFTQKVTLENHCRIHTGEKPYICNICNNRFSKKTNLKYHYRIHSGLKPYQCDICNKTFSLRDRLKEHYRIHTGEKPYVCDICNKAFSQCGNLATHKRTHTGEKPYGCDVCNMTFAESATLKTHSRIHTGERPYTCNVCQKTFSKKGNLTNHHRVHTGEKPYVCEICNKRFSESANLKYHLRLHSQEKAYSCYICNNRYSDKAELKYHYRCHTEVKPYMCVVCNKKFSESVNLKKHYRIHTGEKPYKCEICDKKFTQSGHLETHKRTHTGEKPFTCNICNKKFSQKVTLKRHGRLHSGQLGGPMMSKSDGCHNNEEPQHPDVSSHLNSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370375;
- 90% Identity
- iTF_00370375;
- 80% Identity
- iTF_00370375;