Basic Information

Insect: Coptotermes formosanus
Gene Symbol: -
Assembly: GCA_013340265.1
Location: BLKM01000378.1:77352-110070[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00045 0.022 14.7 4.1 1 23 234 256 234 256 0.97

2 11 1.4e-05 0.00067 19.5 1.5 1 23 262 284 262 284 0.98

3 11 0.00014 0.0066 16.4 2.3 1 23 290 313 290 313 0.96

4 11 0.0051 0.25 11.4 4.0 1 21 319 339 319 341 0.95

5 11 0.00014 0.0067 16.3 1.9 1 23 347 369 347 369 0.99

6 11 1.6e-05 0.00075 19.3 1.2 1 23 375 397 375 397 0.98

7 11 0.00035 0.017 15.1 1.4 1 23 405 428 405 428 0.97

8 11 6.8e-05 0.0033 17.3 2.2 2 23 435 456 434 456 0.96

9 11 0.0001 0.005 16.7 0.6 1 23 462 484 462 484 0.98

10 11 1.4e-06 6.8e-05 22.6 2.4 1 23 490 513 490 513 0.97

11 11 2.2e-08 1.1e-06 28.3 0.8 1 23 527 549 527 549 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00045	0.022	14.7	4.1	1	23	234	256	234	256	0.97
2	11	1.4e-05	0.00067	19.5	1.5	1	23	262	284	262	284	0.98
3	11	0.00014	0.0066	16.4	2.3	1	23	290	313	290	313	0.96
4	11	0.0051	0.25	11.4	4.0	1	21	319	339	319	341	0.95
5	11	0.00014	0.0067	16.3	1.9	1	23	347	369	347	369	0.99
6	11	1.6e-05	0.00075	19.3	1.2	1	23	375	397	375	397	0.98
7	11	0.00035	0.017	15.1	1.4	1	23	405	428	405	428	0.97
8	11	6.8e-05	0.0033	17.3	2.2	2	23	435	456	434	456	0.96
9	11	0.0001	0.005	16.7	0.6	1	23	462	484	462	484	0.98
10	11	1.4e-06	6.8e-05	22.6	2.4	1	23	490	513	490	513	0.97
11	11	2.2e-08	1.1e-06	28.3	0.8	1	23	527	549	527	549	0.97

Sequence Information

Coding Sequence: ATGAGTGAtgacaaggaaagaaagaacgCCAGCCGTTCAGGAGGGCTTTCTGCTGTACAGATTAAGATGGAGGGCCAGGAAAGTGGTGAAACTATTACAGATATCCAGAATTATCTGGAAACATTTAATAAGGAAATTCAAGGAGGAGATCAAATAGTGCAACATATGACAGTTCAGCAAGTTGTGACCGCTGAGGACGCTGCTGAAGAAGGAACGTATTTTGTTGACCAGTCTGGGCATTATTACTACCAAGCAAGTGGTGATCAGCAGCCAGTCATGACTGTTGTATCAGGGGTTGCAGATCCTTCATCTGAAGTGGCTGATGGAACCTCAGAAGCAACTTACGTTGCAATGCAGCCTCAGGAAGGTCATGTTGAAGAGACAATAGCATCTATGGATACTTCTGATGATGGCAATACAGCTGGTGGTGAATCAACGGGGCAGATGATATTAAATGCTGGCGATGCTTACCAGACTGTCACCATTGTACCATCTGACACAAATCCCGGTGAAGTGAGTTATGTGCTTATAGTTCAGCAACCGGACGATAAAGATGACAAGGGTGACGATCAGGACCTTACAGTGTATGATTTTGATGAAGGTGAAGAAGGGGGTATTGCTTTGGAGTCTGGAGATGAAGATGATAAAACCAAAATAATCAAGATTTTACCCAAGAAGTCTCAGACTGTAACTCAGGCTCACatgtgtaattactgtaattacacTAGTccaaaaagGTACCTGCTGTCGCGTCACATGAAGTCTCATTCCGAAGAGCGCCCACACAAGTGTAGTGTGTGTGAACGAGGTTTCAAGACTCTGGCCTCCTTACAGAACCATGTCAACACTCATACGGGAACTAAACCTCACCGGTGTAAATTCTGTGACAGTGCTTTTACAACTTCAGGTGAACTGGTAAGACATGTTCGGTACAGACATACACACGAGAAAccacataaatgtacagagtgTGATTACGCGAGCGTGGAATTGAGTAAATTGAAGCGTCACATGCGCTGCCACACTGGCGAGAGGCCATACCAGTGTCCACACTGTACTTATGCAAGCCCCGACACATTCAAGCTGAAACGTCATCTTCGTATACACACGGGTGAAAAGCCGTATGAGTGTGACATCTGCCATGCACGTTTCACCCAGTCCAACAGTCTGAAGGCACATAAGCTCATTCACAGTGCTGGAGATAAACCAGTTTTCCAGTGTGAGTTATGTCCTACCACATGTGGACGCAAGACTGACCTTCGAATACATGTACAAAAGCTACACACTTCAGACAAACCTCTGAAGTGTAAGAGATGTGGGAAGTCCTTCCCAGACAGGTATACATATAAGatTCATAATAAGTCACATGAAGGagaaaagtgtttcaaatgTGACCTGTGTCCATATGCTTCCATATCTCAGAGACATCTGGAGTCTCACATGTTGATACATACAGATCAAAAACCATATCAGTGTGATCAGTGTGATCAGTCATTCCGTCAGAAGCAGCTACTTCGGCGGCACCAGAATTTGTACCATAATCCCAACtatgtaccaccaccaccaagagAAAAGACACATGAGTGTCCCGAATGTGGGAGAGCATTCCGACACAAAGGGAACCTCATACGACATATGGCGGTCCACGATCCTGAATCGTCAGCACAAGAGAAAGCCCTTGCCCTAAAACTTGGACGTCAGAAGAAGATTCAGATAATTGATGGGCAGCAAGTAGAAGTAATGGCAGGagaggaagatgatgaagatgatgatgatacagatGGTGAAATGATGGCTGTAGAGGGGCAAGATGGGCAGCAGTATGTTGTATTAGAAGTCATTCAGTTACAggaTGGCGATGGTGAGCAAGCAGTGGCTGTTGTGACTGGCGATGCAACACACACCATGGAGCAAGCAGTGGCACTTCATACGGATCTTGCAGATGAAGATGTTATAGAAACACTGAAGAACAGTAGAAAACTGTCTAGGAAAGATGCCTTGGCCATGAGGAAAAGGATAGAGACTGAAAAGGACATGCAAAATTGTTTTGGGTTTGATGATGAAGGAGATGACATGGATGATGATGAGGCTACAAAAACAACGATCCAGTTGCTAGAAGCCATTCACTAG
Protein Sequence: MSDDKERKNASRSGGLSAVQIKMEGQESGETITDIQNYLETFNKEIQGGDQIVQHMTVQQVVTAEDAAEEGTYFVDQSGHYYYQASGDQQPVMTVVSGVADPSSEVADGTSEATYVAMQPQEGHVEETIASMDTSDDGNTAGGESTGQMILNAGDAYQTVTIVPSDTNPGEVSYVLIVQQPDDKDDKGDDQDLTVYDFDEGEEGGIALESGDEDDKTKIIKILPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCDSAFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLKRHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICHARFTQSNSLKAHKLIHSAGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYTYKIHNKSHEGEKCFKCDLCPYASISQRHLESHMLIHTDQKPYQCDQCDQSFRQKQLLRRHQNLYHNPNYVPPPPREKTHECPECGRAFRHKGNLIRHMAVHDPESSAQEKALALKLGRQKKIQIIDGQQVEVMAGEEDDEDDDDTDGEMMAVEGQDGQQYVVLEVIQLQDGDGEQAVAVVTGDATHTMEQAVALHTDLADEDVIETLKNSRKLSRKDALAMRKRIETEKDMQNCFGFDDEGDDMDDDEATKTTIQLLEAIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995620;
90% Identity: iTF_00396609; iTF_01567244;
80% Identity: -