Basic Information

Insect: Coptotermes formosanus
Gene Symbol: ab
Assembly: GCA_013340265.1
Location: BLKM01000821.1:868086-880915[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.038 1.8 8.7 0.4 2 23 566 587 565 587 0.95

2 14 1.2e-06 5.8e-05 22.8 0.2 2 23 594 615 593 615 0.98

3 14 0.0002 0.0097 15.8 0.4 1 23 621 643 621 643 0.96

4 14 2.2e-06 0.00011 22.0 0.5 1 23 651 673 651 673 0.98

5 14 8e-05 0.0039 17.1 4.8 1 23 679 701 679 701 0.98

6 14 0.00027 0.013 15.4 1.1 2 23 711 731 710 731 0.96

7 14 0.00034 0.017 15.1 7.6 1 23 735 758 735 758 0.92

8 14 2.5e-08 1.2e-06 28.1 1.1 1 23 764 786 764 786 0.99

9 14 8.8e-06 0.00042 20.1 1.3 1 23 798 821 798 821 0.94

10 14 0.00028 0.013 15.4 0.5 1 23 829 851 829 851 0.98

11 14 0.00017 0.008 16.1 3.6 1 21 857 877 857 879 0.94

12 14 6.4e-06 0.00031 20.5 3.2 1 23 885 907 885 907 0.98

13 14 0.0013 0.065 13.2 2.0 1 23 917 939 917 939 0.97

14 14 3.2e-06 0.00015 21.5 4.9 2 23 946 967 945 967 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.038	1.8	8.7	0.4	2	23	566	587	565	587	0.95
2	14	1.2e-06	5.8e-05	22.8	0.2	2	23	594	615	593	615	0.98
3	14	0.0002	0.0097	15.8	0.4	1	23	621	643	621	643	0.96
4	14	2.2e-06	0.00011	22.0	0.5	1	23	651	673	651	673	0.98
5	14	8e-05	0.0039	17.1	4.8	1	23	679	701	679	701	0.98
6	14	0.00027	0.013	15.4	1.1	2	23	711	731	710	731	0.96
7	14	0.00034	0.017	15.1	7.6	1	23	735	758	735	758	0.92
8	14	2.5e-08	1.2e-06	28.1	1.1	1	23	764	786	764	786	0.99
9	14	8.8e-06	0.00042	20.1	1.3	1	23	798	821	798	821	0.94
10	14	0.00028	0.013	15.4	0.5	1	23	829	851	829	851	0.98
11	14	0.00017	0.008	16.1	3.6	1	21	857	877	857	879	0.94
12	14	6.4e-06	0.00031	20.5	3.2	1	23	885	907	885	907	0.98
13	14	0.0013	0.065	13.2	2.0	1	23	917	939	917	939	0.97
14	14	3.2e-06	0.00015	21.5	4.9	2	23	946	967	945	967	0.97

Sequence Information

Coding Sequence: ATGGATGTATTAAGTATGCAGTATACCACAGGACGAATGAATATGCACAACATGACGACGCAGTTTCAAGCCGTCCAATGGGAGGATCACTTCAGTCACTTGGTGACGACACTGAAGGACTTCGCATTACTAAACATTTTAACTGACACTACTCTAGTGACAGGAAATCTCAAAGTGCCAGTACATCGTGTGATAATATCATGTTACAGTTCCTATCTAAAACAGTTTCTGACTAATGAAATTCTAAATTGTTATATATTGATTAATGACATTGAGGAATCACTTCTGCAAGTTCTTGTTAGTTACATCTATACTGGCGTAACTTCAGTTCCTCTATCCAGTTTGAATGACTGGTACAAAACGTCCAAGCTGCTGAAATTAGATAGCGTATTAGAGGCTGGCAGAAATGATTGTTCTGAAGACATGGCTTATTTTACATGGCCACGACACCAAGAAATGGTCCTCCAGTATCTCTGGCAATCTCGATCTGATCCAGCAGAATGTGATGTGATTTTAGTGACGGACAGTTTTTCACAGACTTTTGCACATTCTTGCATTTTGGGTGCATGCAGTAAACATTTGCTCAACATTTTCCTCAGGCATAgagaaaggaataaaaacaaGCCATATGTGTTGATTCTTCAGAATGTCAGAGGTGAAGATCTTGAGGCTGTTCTTGAGTTCTGTTACAGAGGAACTGTTCCTGTATTTGAGGGGAACGTTAGTTCCATTTATGACACAGCTGAACTATTAGGCATTAAGAATCTCTGTAGCAAATTGATTTCTATAGATCCTATGATCGaaaaaatgtctgaaataaatggaatgaaCTATATTGCGTCAGATGTTGTCAGTAGGATAAAGGCTTGCCATTTCTCATCTCAACAGAATGAACATTCTCTGCAACTCCAAAATGTCTTTCAACACTTTTTTCAATATGAAGACTTGGTTGACATAACATTACTCAAAGGCAAACAGAGCTTCACAGCTCACATTGCTGTATTAAGTGCCTTTAGCATGTACTTTGAAAAGCTTACCAAATGTCTTCAACGTAACATGAAAGATGCTTTTGTACTCATCAAAGACTTACAGACTCAGCATATACAAGCTTTTCTAGATTATATATACAAAGGAATAGCAGAGTTTGCAGGGACTACAGAGGTGTTTTGTGAGGTCATGTCAGACTGGATTGATTTCAGTGTATTGTCAATTTTTGAGTCAGAAACATGCCAAATTCTAACTAATGCAACATCTGTAATGATGCAGAAGGCAGAATTTAGTGAATCAGTGGAAGACCAGAACATTTTTCATGCTGATGACATTCTCTGCCCAAATATGCAACAACAAGGAGAAATTCTAGAGAAAGATCAAACTACGCAGCAAGGAGATTGCACTGAAAGTGGACAAAGTTCCAGAAACCTAGAGAATGTTATCATTTTAGAAATGCCTCCTGCAACAACAGAAGCATTGGAAGAAGCGGGACCATTTGAAGGGAATGGAGATGAGGCGAAAACAATTGAAACATCTGTGAAACAAGACTGGAAGAACTTGAAAAATGAGTGTCAAATGAATGTTGAGGATGAACTAGCAGACAGAAGCACAGTGTCAGATGAAGACAAAGcaacagaagaagcagaagtagAAGCAGCAGAAAACAGACCGCACAAGAGATGGAGAGAAAGGGATTCTGTTTTAACGTGTTACACATGTAATGGAAATTTTGAATCACGGAAGGAGCTGAGGGAGCACTTAGTTATTCATCCCAACGGCAGGGTTATGAAGTGCAGTTACTGCGGGAAGGGATTTGATAGACCAAGCCAGATGGAACTTCATATTCGCATACATACAGGTTCTAAACCATTTTCTTGTACACAGTGTGGCCATGCTTTTGCAGCAAAGAGTGCACTGCGGAAACATGCTGATATTCACGCCAAGGATAAGGGCAAAATGTTTGAGTGTGCTGTATGTAACAAGTTATTTTCAAGAAAGGAATACCTGGAGGAACATATCAGGACACATACTGGCAACAAACCATTCGAGTGTTCAATATGCCATAAGACTTTTGTTGGCCGCACTGGTCTGAACCACCACAGGAAAACGCATGCAGATGCATGTGAGAAGAAGGATTCTATGTGTGAAGTGTGTGGGAAGAGCTTCACACGCCATGCTCTGTGGACGCACGTCAAGTCACATGAAAAGACCCACTGCTGCCACCAGTGCAACAAGTGCTTCTCTACTGCGTCTGCATTGCGAGTTCATATTACAGGCACACATCTTGGATGCAGGAGTTATCAGTGTGAAATATGTGGCAAAGGTTTCATACAGAAGAACCATCTGATCCGCCACATGAAGGTACATGACAACACAAGGGATGTGCGGAATACAAAACCATTTCTGTGTGGAAAGTGCCCACGAACATTTAAAACCAAAAGCAAACTTGAGTCACACACACGAGTGGAACATATAGAACCAGGAGAACGTCCCTATTCTTGTGAGATCTGCAACAAACGCTTTGCAGGTCGAAGCACCGTTATCTACCATCGCCGTGCACATACGGGTGAACGTCCACACAGTTGTTCAACTTGTGGCAAGAAATTCATGCGTCCAGATGCTCTGCGCCAGCACATGATGTGTCATACTGGTGAGCGTCGACATCAGTGCTCTGTTTGTAGCAGAAAGTTTGCCACCAGAAGTAATCTCAATAAACATGTTCAGTCACATAAGGAAACAACTGAGAAACAAACATCTTTcaactgtgatgtgtgtcataAAGGTTTTCAGTCTGAAACACAGCTGTCATCACATTCTCGAGTGCACAACAGCTGTAGACCTTTACAATGTCACGTCTGTCACAAATCATTCCGCTACCAGGACAGCCTAACAAAACATCTAAACATTCACAACGTTGCACAAGACGACACTCCTAATAGCGAGTTGTCATGCGTATATTCTTTTCAAGTTTGTGGACAAACATTTGAACTgaacagccatacaaaacagacTGAAGACCACAGCTACAGAAATATAAACCTCATTCAAAATACTGACAGAGATATTGTTCAAGATTCCCTCCAAGAGTATACTATTTCTCCTGCAGTTGTGAATAGTAGCATCTGTATAAGAGATGTGAACAAGGCCACTGTGGCTGTTCCCCAGCGTCGCCCCTACAGCATAACAATAGATGGCAACCTATGCTGTAATACTGAtgttcaaaacacaaacattttacctGAAGTTGGAAACATTGATCCATCCACAGACTTGCCACCCCCATTAACATCTCTCCATCCTTTGTCACATCCACACCATGGATTAGATCTGCATTCAGTGATTAGTTTGACATCCTCACATGTTCAGGAACAAGAAACTCATCATCATATTGAAGTGGTAGGTAATCCTCCTGTGCCATACACTGAACCACTTTTTATAGAGAACTGCAGTCAGATTTCGCAGGAACACAGCAAGCAGAAAATGATTCAGGATTCAAGCAGAGTGTACAGTAAGGTAGAAACGTGA
Protein Sequence: MDVLSMQYTTGRMNMHNMTTQFQAVQWEDHFSHLVTTLKDFALLNILTDTTLVTGNLKVPVHRVIISCYSSYLKQFLTNEILNCYILINDIEESLLQVLVSYIYTGVTSVPLSSLNDWYKTSKLLKLDSVLEAGRNDCSEDMAYFTWPRHQEMVLQYLWQSRSDPAECDVILVTDSFSQTFAHSCILGACSKHLLNIFLRHRERNKNKPYVLILQNVRGEDLEAVLEFCYRGTVPVFEGNVSSIYDTAELLGIKNLCSKLISIDPMIEKMSEINGMNYIASDVVSRIKACHFSSQQNEHSLQLQNVFQHFFQYEDLVDITLLKGKQSFTAHIAVLSAFSMYFEKLTKCLQRNMKDAFVLIKDLQTQHIQAFLDYIYKGIAEFAGTTEVFCEVMSDWIDFSVLSIFESETCQILTNATSVMMQKAEFSESVEDQNIFHADDILCPNMQQQGEILEKDQTTQQGDCTESGQSSRNLENVIILEMPPATTEALEEAGPFEGNGDEAKTIETSVKQDWKNLKNECQMNVEDELADRSTVSDEDKATEEAEVEAAENRPHKRWRERDSVLTCYTCNGNFESRKELREHLVIHPNGRVMKCSYCGKGFDRPSQMELHIRIHTGSKPFSCTQCGHAFAAKSALRKHADIHAKDKGKMFECAVCNKLFSRKEYLEEHIRTHTGNKPFECSICHKTFVGRTGLNHHRKTHADACEKKDSMCEVCGKSFTRHALWTHVKSHEKTHCCHQCNKCFSTASALRVHITGTHLGCRSYQCEICGKGFIQKNHLIRHMKVHDNTRDVRNTKPFLCGKCPRTFKTKSKLESHTRVEHIEPGERPYSCEICNKRFAGRSTVIYHRRAHTGERPHSCSTCGKKFMRPDALRQHMMCHTGERRHQCSVCSRKFATRSNLNKHVQSHKETTEKQTSFNCDVCHKGFQSETQLSSHSRVHNSCRPLQCHVCHKSFRYQDSLTKHLNIHNVAQDDTPNSELSCVYSFQVCGQTFELNSHTKQTEDHSYRNINLIQNTDRDIVQDSLQEYTISPAVVNSSICIRDVNKATVAVPQRRPYSITIDGNLCCNTDVQNTNILPEVGNIDPSTDLPPPLTSLHPLSHPHHGLDLHSVISLTSSHVQEQETHHHIEVVGNPPVPYTEPLFIENCSQISQEHSKQKMIQDSSRVYSKVET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01289056;
90% Identity: iTF_00370282;
80% Identity: iTF_00370282;