Cfor012159.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coptotermes formosanus
Gene Symbol
MBD4
Assembly
GCA_013340265.1
Location
BLKM01010343.1:8022-23662[+]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.3e-20 2.7e-17 61.6 0.1 7 71 313 375 307 378 0.95

Sequence Information

Coding Sequence
ATGTCCCCAACCCAAAGAAGAGAACTGGAAGATATGTCACATGCTGAAAATGCAAAAGAACCCATTGCTGTTGGTAATGAGCTAGAAAGTTTAGAGCTAAATTCTGGTAactttgtgttgtgtggtgatgaagTTGCAAAGCCTGGAGAGGATGTTCCAGGTTCACATGTTTGGGAACTGTGTACACCAGAGATTGAAACCGCAACACTGCCATCTGTAGTGTGTTTGTCAGATGTTTCGTATGTTGGATGCAGTCTGTCAGGAATACATGAGGAAACACCTGGAGCTGCTGACAGTGCCATCGTCACAGAAGAATGCAGCAAAAACAGAGTCCAGAAATATAATCAAGCAGAGCACAAACCTCACGTTGGAGGCATCAGTGAATCAAGTACATCTTGCACTGTCATGGATATTAAGCAGGAAGCCCAAGGCAGTGGAGAAACTAATGATATGATGGGACTGTTTATCTGTACAGAACATGATATGCGAGGTCATGTGATAGACCTTGAAGCATCAGACAGTGTAAGTTCCTTGGGAACTCATTCTAGGCAAAAAAGGAAGAGAAGAGAGTCACACTCACTGGTTAAGAATTCATCTGGAAGTAGAAAGTCTAGATCTGTGTGTGACACATCACATGTTGAACAGAAATCCAGATGGGTTAAAAGGTACAGAACTAGAAGTATTGACCCTACTGAAGACACTGATTCTAATGTTGTTGCTGATATGCAAGAATtcaatttgaaaaatacacacactggaATTACAGAGTTACACCTTCAGTGTGTAGACAAGACTGAACCATCGCCTTCCAGATACTTGTCCCTGAATGATGCTACATCAACATCTTTTAGAATGGCTGTTGCTGGTAGTGCATTGTGTGATGTGCTGGACTTTGCTGCATCGTCAGGTGTACAGCATAAGaaacAGCCTATGTATGTTGACCCAAGGCTGCCCAAGGGCTGGACAAGGAGTGTTGTGCAGAGAAAGAAAGGTGCATCAGCAGGAAAATTTGATGTCTATATTTTCAGtcctgaaggaaagaaatttcgGTCACGAAGGGAGTTGAAGACTTTCCTGCTGGAGACCAATTTATTTCTGAATGCTGATGACTTTGATTTTTCTGTGACTGGGAAAGGTGTCACAGTGGAAGGCGAATTGGGGTTCAACGAGAGTACAGTTCAGAATTTAGATTTAATTAATGAGGGGAAAGTAAATGGTGAGATACTTCTAGAATGTAACTCGGAAAATTTTCAGGATGGAACCAAAGACCTGTGCTACAATAATATACCCAAAATACAGGAAGACTCTGAGAATGAGTGTGCAGATAAATTGGTACAGCCTTCTTCACGTAGTTTGGAACCAAATGTCGGAATGTCCAGCAGAGTAACAAGCTTTTGCGCCACAGGAGAATTGGAGCTCAATGAGAATACAGTTCAGGGTTCAGATTTAATTGATGAGGGGCAAGTAAATGGTGAGATACCTCTAGAATGTAACTTGGAAAATTTCCAGGATGAAACCAAAGACCTGTTTTGCAAGAGTGTACCCAAAATACAGGAAGACTCTGAGAATGAGCGTGCAGATAAATTGATACAGCGTTTTTCATGTAGTTTGGCACCAAATGTTGGAATGTCCCGTAGAGTAATAGGCTTTTGCCCCACAGGAGAATTGGAGCTCAACGAGAATACAGTTCAGGGTTCAGATTTAATTGATGAAGGGCAAGTAAGTGGTGAGATACCTCTAGAATATAACTTGGAAAATTTCCAGGATGAAACCAAAGACCTGTGCTCCAAGAACGTACCAAAAATGCAGGAAGACTCTGAGGATGAGGTGGCAGGTAAATTGGTACAGCCTTCTTCACGCAGTTTGGAACCAAATGTGGGAATGTCCCGCAGAGTGACAAGTGTCTACTTTGCTTCGAATGGGGTGTCTaaaagaatttcaaatagaCTTCATGATTCAGATGTAGGTAACAAGTGTAAAAGTGTTGACATTTCAAGTTTTGTACAAGCAGAGCCAACACTGGTGTATAAAAGTActgacactgaagatggtgaTGTTACAGTTCCTCCACAGTTTgacgacaaaatatttcaggctGATGTCAGtaatacagcatgcaaagctaTTCCCTGTGCTAAAGCTATACTGAAGAGCAAGATAAAGACCAAGTGGACACCACCTCGCTCACCTTTCAATTTGGTGCAAGAACACTTGTATCACGATCCTTGGCAGCTACTTGTTGCTACAGTCTTTCTCAATCGGACTCAGGGTGAAGTAGCCCTTCCTTcactatttaaattttttgctgCTTGGCCAACGCCAGAATCAATCATAAATGCATCTCAGTTGGATATTGCTCAGTTCCTACGTCCATTGGGTCTACAAGAAACTCGTGCCTATGCCATCAAGCGAATGTCCCaaGATTATGTCACTAAGGATTGGAGGGATGTAAAAGAACTGTTTGGAATTGGAAAGTATGGAAGCGACTCTTACAAGATCTTTTGTTTAAATCAGTGGAAATCTGTTAGGCCAGCCGACCTAAAACTGAAGAACTATGTAAAATGGCTGTGGACCAACCACAGATCTCTTGGATTAAGTTGA
Protein Sequence
MSPTQRRELEDMSHAENAKEPIAVGNELESLELNSGNFVLCGDEVAKPGEDVPGSHVWELCTPEIETATLPSVVCLSDVSYVGCSLSGIHEETPGAADSAIVTEECSKNRVQKYNQAEHKPHVGGISESSTSCTVMDIKQEAQGSGETNDMMGLFICTEHDMRGHVIDLEASDSVSSLGTHSRQKRKRRESHSLVKNSSGSRKSRSVCDTSHVEQKSRWVKRYRTRSIDPTEDTDSNVVADMQEFNLKNTHTGITELHLQCVDKTEPSPSRYLSLNDATSTSFRMAVAGSALCDVLDFAASSGVQHKKQPMYVDPRLPKGWTRSVVQRKKGASAGKFDVYIFSPEGKKFRSRRELKTFLLETNLFLNADDFDFSVTGKGVTVEGELGFNESTVQNLDLINEGKVNGEILLECNSENFQDGTKDLCYNNIPKIQEDSENECADKLVQPSSRSLEPNVGMSSRVTSFCATGELELNENTVQGSDLIDEGQVNGEIPLECNLENFQDETKDLFCKSVPKIQEDSENERADKLIQRFSCSLAPNVGMSRRVIGFCPTGELELNENTVQGSDLIDEGQVSGEIPLEYNLENFQDETKDLCSKNVPKMQEDSEDEVAGKLVQPSSRSLEPNVGMSRRVTSVYFASNGVSKRISNRLHDSDVGNKCKSVDISSFVQAEPTLVYKSTDTEDGDVTVPPQFDDKIFQADVSNTACKAIPCAKAILKSKIKTKWTPPRSPFNLVQEHLYHDPWQLLVATVFLNRTQGEVALPSLFKFFAAWPTPESIINASQLDIAQFLRPLGLQETRAYAIKRMSQDYVTKDWRDVKELFGIGKYGSDSYKIFCLNQWKSVRPADLKLKNYVKWLWTNHRSLGLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-