Basic Information

Insect: Coproporus ventriculus
Gene Symbol: ECU06_1150
Assembly: GCA_027574865.2
Location: JAODAH020009077.1:1918-3701[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00093 5.5 7.6 0.0 21 48 357 384 340 386 0.85

2 4 0.16 9.7e+02 0.4 0.0 16 40 409 433 399 440 0.79

3 4 0.0049 29 5.3 0.1 18 44 467 493 464 497 0.90

4 4 1.5e-07 0.00086 19.8 0.4 21 48 498 525 495 528 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00093	5.5	7.6	0.0	21	48	357	384	340	386	0.85
2	4	0.16	9.7e+02	0.4	0.0	16	40	409	433	399	440	0.79
3	4	0.0049	29	5.3	0.1	18	44	467	493	464	497	0.90
4	4	1.5e-07	0.00086	19.8	0.4	21	48	498	525	495	528	0.92

Sequence Information

Coding Sequence: GTCTGCCGATTGTGTGCAAATGAAGCCGATAAACTCGTAGGAATTTATAGCAAGGAGGGCAGAACTAATGAAATGgcagataaaataaatcagtacCTACCCATAAAAGTTTCTGAGGCGGATGTTCTTCCATTACAGTGCTGTTTATCTTGTGCACAAACCATATTAACTTGGCATGAATTGTATACAGTATGTATTGAAGCAGAGAAAAAGTTCAcccaaataataattgatgataaagaagaagaagaagacaaCTCACAAGTAATAGAAGCTGAAGAATTGATTGATGATCCAGAAATTGATTTGGAAACAACTGAAAATATCGAGGCAATGGCGGAGACGGAAACCGCAAGTCTGAATGTTTTATGCCAAACAGCACCCAATAAAAAGCAGAAAGCAAAATTTGTTACTTCGCAAATTATGTGGCTGAAACCCCATGAATCCGGCGATTATAATCTGCAAGCTTTGTTAAGCGTTGaagattataaattgttaaaatcgcATGTAGGGAAAGAGGAGGGAGGTGTGAAGAATCTTAAAGAAGAGATTGAGTGTGATGAATCTTTGGTGTCTTATATTGAACAATCCGGTTTGacggaaattaatttgtttggtgcAAGCAAGAAAAGTGGTAGTGATGTGAGTGTAAAGgaagaaagtttaaatatgTCTGACGGGATTGAGACAATTATGAATAAATCTGGTACTTCTGGGGTagctaagaaaaaaaatttcaaaatggaggattttaaagaagaattttctTCTGATGAAGATGGAAATGCTGAagcattttctataaaaattgaaaatgatatttgtgTTTACACCTGCAAACTTTGTAATTCCAAGCATATGAACGaagaaggaattttaaatcatataaaaaccAAACATAAAGAGGAGGATTCAAAGAAAGAGCGCCGAAAGAATACAAAATTGGATCAAAAAGCTGTTAATGAAGCAAAAGTTGTGGTTGATGGTAAGGTTTactataattgtaaaatatgcgGGAAAAGTTTACATTCACCTTACACATATATTTGGCATATGAGGATTCATACTGGAGAAAGACCGTTTGTTTGTGATTTGTGTGGTAAACAATTCCGGGTATCTCAAGGCTTAGTGCGGCACCTTAAAGAAACACATGAaggcataaaaaattttccatgtgATTTATGTGGACGTATGTTTGCAACCCGAAGGAACGTTGAGGAGCATCGAAGAATTCATACCAATGAACGACCGTATGTATGCGACTTATGTGGGAAAGCTTTCAAGCAAAAAGCATCGTTATTTGTGCATAATCGATCACATACGAATTCATTTCCTTTCCGCTGTAGCTACTGCAATCAAGGCTTCCGCACACGTCCACCTCTCTTACTTCATATAACCCGCCATACTGGAGAAAAACCATACCCTTGTGAAGTTTGTGGTCGATGTTTTCGTATAAAATACGAATTGAAACGACATATGCTGATACATTCAGATGAAAAACCATTTACTTGCAGTATTTGTGGAGCGAATTTCCGGCAAAAGAGATATCTACGTAACCATACCAGGATCAACCATAATCGAGAAAGTAcctaa
Protein Sequence: VCRLCANEADKLVGIYSKEGRTNEMADKINQYLPIKVSEADVLPLQCCLSCAQTILTWHELYTVCIEAEKKFTQIIIDDKEEEEDNSQVIEAEELIDDPEIDLETTENIEAMAETETASLNVLCQTAPNKKQKAKFVTSQIMWLKPHESGDYNLQALLSVEDYKLLKSHVGKEEGGVKNLKEEIECDESLVSYIEQSGLTEINLFGASKKSGSDVSVKEESLNMSDGIETIMNKSGTSGVAKKKNFKMEDFKEEFSSDEDGNAEAFSIKIENDICVYTCKLCNSKHMNEEGILNHIKTKHKEEDSKKERRKNTKLDQKAVNEAKVVVDGKVYYNCKICGKSLHSPYTYIWHMRIHTGERPFVCDLCGKQFRVSQGLVRHLKETHEGIKNFPCDLCGRMFATRRNVEEHRRIHTNERPYVCDLCGKAFKQKASLFVHNRSHTNSFPFRCSYCNQGFRTRPPLLLHITRHTGEKPYPCEVCGRCFRIKYELKRHMLIHSDEKPFTCSICGANFRQKRYLRNHTRINHNREST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00369742;
90% Identity: iTF_00369742;
80% Identity: iTF_00369742;