Cflr000842.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- Znf131
- Assembly
- GCA_000648655.2
- Location
- NW:96695-98395[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.021 27 4.4 0.0 21 47 35 61 32 67 0.84 2 13 0.23 3e+02 1.0 0.0 20 45 119 144 108 152 0.81 3 13 1.8 2.3e+03 -1.8 0.0 21 43 148 170 144 176 0.81 4 13 1.1 1.4e+03 -1.1 0.1 25 45 180 200 170 208 0.69 5 13 0.014 18 5.0 0.0 21 45 232 256 224 264 0.85 6 13 0.17 2.1e+02 1.5 0.0 23 47 262 286 257 292 0.84 7 13 0.049 62 3.2 0.0 21 44 288 311 283 320 0.87 8 13 0.086 1.1e+02 2.4 0.0 21 44 372 395 367 400 0.88 9 13 0.013 17 5.0 0.1 21 45 400 424 394 428 0.89 10 13 0.0026 3.4 7.3 0.0 21 45 428 452 424 460 0.85 11 13 0.23 2.9e+02 1.1 0.0 22 47 457 482 452 488 0.84 12 13 0.23 2.9e+02 1.1 0.0 21 44 484 507 479 516 0.84 13 13 5.4 6.9e+03 -3.4 0.0 27 44 546 563 544 564 0.79
Sequence Information
- Coding Sequence
- ATGAGATCGGCACTGAAAAACACTTGTACGAGACTTTGCGAGATCTGCGGTAAATTATCTGCCAATCTTACACATTTTAAAGCGCACCAACTTATTCACACGGGCGAGAAACCCTTCGAGTGTTCAATTTGTTTACAAAAGTTTAGTCAAAAAATGTCCCTTATAAGACACAAACAAACTCACACAGGGACAAAACCCTTCAAGTGCTCAGATTGTTCTAAAACATTTGGGTACAGAGATACAATCATAAAACACATACGAACTGCTCACACACAGGAGACACTATTTGAGTGCATAGTAtgtcaaaaaggttttaaaacTTCTGGTGAACTGACAAAGCACAAGAGGACCCACACGGGGGAGATACCTTTCAAGTGCTCAGTGtgtcaaaaaagttataaatcttCAGTTAATTTCTTAACGCACATGGGGACCCACACTGGCGAGAAACCCTTCAAGTGCTCTTATTGTTCCAAAACATTTAGCAAACAAACGAATCTCGCACTACATAGACGGACCCACACAGGGGATAAATCCTTAAACTGCCCAGTATGTCAAAAAGATTTTGCATATTCAAGTGTCTTCATAAAGCACATGCGGATTCACACAGGAGAGAAACCTTTTCAGTGCACAGATTGTTCAAAATCTTTCAGCCTAAAAAGCACTCTGACGAGGCACATCCGAACCCACTTGGGGGAGAAACCGTTTAAGTGCCCAacgtgtggaaaaggttttacATTATCTGGTAACCTTACAAAGCACATGATGACTCACACGGGAAAGAAACCCTTCGAGTGCTCAACTTGTTCTAAAACATTTAGTCAAAAATCCAATCTCATAATGCACTTACGGACTCACACAGGGGAGAAACCCTATAAGTGCTCAGTATGTCAAAAAGGTTTTACAACTTCTAGTAATCTTGTAAAGCATACGTGGACCCACAAAGAGGAAAAACCCTATAAGTGCGCAAATTGTCCAAAATCTTTCGGACTAAAAAGTACCCTCAGGGCTCACATGCGTGTCCACACTGGCATACCTTTAAGTCACTTCACCATCTGCCAAAAGCCATTTATGTACTCGAGTAATCTTATAGTACACATGAGGACCCACACGGGGGAGCGACCCTACAAGTGCTCGGTGTGTCAAAAAGGTTTTAGATCTTCTGGTTCACTCGCAGATCACATGCGAACTTACACAGAGGAAAAACCCTATAGATGTACAGATTGTCCAAAATCTTTTAGCCAAAATGGCAATCTCAAGAGGCACATGCAAACCCACACGGGAGAGAAACCGTTTAAGTGCCCAacgtgtggaaaaggttttacATTATCTGGTAACCTTACAAGGCACATGATGACTCACACGGGAAAGAAACCCTTCGAGTGCTCAACTTGTTCTAAATCATTTAGTCAAAAATCCAATCTCATAATGCACTTACGGACTCACACAGGGGAGAAACCCTATAAGTGCTCAGtatgtcaaaaaagttttacaacttCTAGTGATCTTGTAAAGCATACGTGGACCCACAAAGAGGAAAAACCCTATAAGTGCGCAAATTGTCCAAAATCTTTCGGACTAAAAAGCAGTCTTAGTATTCATGTGCGCGTCCACACTGGCATACCTTTTAGTCACTGCACCATCTGCCAAAAGCCATTTATGCACGCGAATAGTCTTAAAAAGCATATGGGGACccattaa
- Protein Sequence
- MRSALKNTCTRLCEICGKLSANLTHFKAHQLIHTGEKPFECSICLQKFSQKMSLIRHKQTHTGTKPFKCSDCSKTFGYRDTIIKHIRTAHTQETLFECIVCQKGFKTSGELTKHKRTHTGEIPFKCSVCQKSYKSSVNFLTHMGTHTGEKPFKCSYCSKTFSKQTNLALHRRTHTGDKSLNCPVCQKDFAYSSVFIKHMRIHTGEKPFQCTDCSKSFSLKSTLTRHIRTHLGEKPFKCPTCGKGFTLSGNLTKHMMTHTGKKPFECSTCSKTFSQKSNLIMHLRTHTGEKPYKCSVCQKGFTTSSNLVKHTWTHKEEKPYKCANCPKSFGLKSTLRAHMRVHTGIPLSHFTICQKPFMYSSNLIVHMRTHTGERPYKCSVCQKGFRSSGSLADHMRTYTEEKPYRCTDCPKSFSQNGNLKRHMQTHTGEKPFKCPTCGKGFTLSGNLTRHMMTHTGKKPFECSTCSKSFSQKSNLIMHLRTHTGEKPYKCSVCQKSFTTSSDLVKHTWTHKEEKPYKCANCPKSFGLKSSLSIHVRVHTGIPFSHCTICQKPFMHANSLKKHMGTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368963;
- 90% Identity
- iTF_00368963;
- 80% Identity
- iTF_00368963;