Cflr009935.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:3149470-3150901[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.043 54 3.4 0.0 23 44 10 31 6 40 0.87 2 12 0.42 5.4e+02 0.2 0.0 21 43 36 58 32 67 0.77 3 12 0.0068 8.6 6.0 0.0 21 44 64 87 57 90 0.92 4 12 0.027 35 4.0 0.0 21 51 92 122 88 124 0.85 5 12 0.00014 0.18 11.4 0.2 21 52 148 179 140 181 0.88 6 12 0.18 2.2e+02 1.4 0.1 21 43 176 198 172 203 0.81 7 12 0.0068 8.6 6.0 0.1 21 43 204 226 196 231 0.88 8 12 0.01 13 5.4 0.0 21 44 232 255 230 260 0.90 9 12 0.0066 8.4 6.0 0.1 21 46 260 285 256 292 0.86 10 12 0.072 91 2.7 0.1 21 45 288 312 284 320 0.83 11 12 0.25 3.2e+02 0.9 0.1 17 43 339 366 334 375 0.70 12 12 0.79 1e+03 -0.7 0.0 22 43 401 422 397 426 0.78
Sequence Information
- Coding Sequence
- ATGCACATTTATAACCACACAGGCAAAAAGCCATATAAATGTGAAATTTGTGGCAAATCTTTTGCTCAATTAAATAATCTGAAAATGCACATTTATAACCACACAGGCGAAAAGCCATATAAATGTGAAATTTGCGGCAAATCTTTCGGTAacttatctattttaaaaaggCATGGTACTGTTCACACAGGCGAAAAGCCATATAAATGTGATATCTGCAACAAATATTTTGCTCAATTAAATAATCTCAAAATGCACATCTATAACCACACAGGCGAAAAGCCATATAAATGTGAAATTTGCGGCAAATCTTTCGGTGACGCATCTGTTTTAAAAAGGCATATTGTCGTTCACACCAGTAAAAAGCCATATGAATGTGAAACCTGCAACAAATCTTTTGCTCAATTAATTCATCTGAAAATGCACATTCGTAACCACACAGGCGAAAAGCCACATAAATGTAAAATCTGTAGCAAATCATTTGTTCGATCGAGTTCTCTAAAAAGGCACTTACAGACCCATGCAGTCGAAAAACCACATAAATGTGAAATCTGCGACAAATCTTATACTCAATTTAGTCGGTTGAAAATGCATACTCGTATCCATACAGGCGAAAAGCCATATAAATGTGAAATTTGCAACCAATCTTTTTATCAATCAACTCATCTAAAAACACACACTCTTATCCATACAGGCGAGAAACCATATAAATGTGAAATTTGCGACCAATCTTTTTATCAATCAACTCATCTAAAAACACACACTCGTATCCATACAGGCGAAAAACcacataaatgtaaaatttgcgaCAAATCTTTTCTTCAATCaactcatttaaaaatacacattCGTACCCATACAGGCGAAAAACCACATAAATGTAAAATCTGCGACAAATCTTATACTCAATTAAGTAGTCTATATAAGCACATACATAACCATTCaggaaaaaaaccatataaatgTGAAATCTGTGGCAAATCTTTTGTCAGAATAAGTGATCTAAAAGTACATTCTCGCAATCATGATACCGAAAAACCACATAAATGTAACGTCTGCGGAAAATCTTTCATTAGTAATTTTCTTTTGCAAAGGCATAATCGTGTACATACAGGCGAGCGACCCTTTAAATGCAACGACTGTGGTAAGTCTTGTTCTACCAAACATCAGTTAATAATCCACATTCGTGTTCATACAGGTGATAAGCCATACAAATGTAAAATCTGCGGCAAATCGTATTCTCGAATAGTTAATCTAAAAATGCATACTCGTATTCATACAAACTGA
- Protein Sequence
- MHIYNHTGKKPYKCEICGKSFAQLNNLKMHIYNHTGEKPYKCEICGKSFGNLSILKRHGTVHTGEKPYKCDICNKYFAQLNNLKMHIYNHTGEKPYKCEICGKSFGDASVLKRHIVVHTSKKPYECETCNKSFAQLIHLKMHIRNHTGEKPHKCKICSKSFVRSSSLKRHLQTHAVEKPHKCEICDKSYTQFSRLKMHTRIHTGEKPYKCEICNQSFYQSTHLKTHTLIHTGEKPYKCEICDQSFYQSTHLKTHTRIHTGEKPHKCKICDKSFLQSTHLKIHIRTHTGEKPHKCKICDKSYTQLSSLYKHIHNHSGKKPYKCEICGKSFVRISDLKVHSRNHDTEKPHKCNVCGKSFISNFLLQRHNRVHTGERPFKCNDCGKSCSTKHQLIIHIRVHTGDKPYKCKICGKSYSRIVNLKMHTRIHTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368975;
- 90% Identity
- iTF_00368975;
- 80% Identity
- iTF_00368975;