Basic Information

Insect: Copidosoma floridanum
Gene Symbol: YY1
Assembly: GCA_000648655.2
Location: NW:376309-379299[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0042 5.3 6.6 0.0 21 52 47 78 44 80 0.89

2 19 0.55 7.1e+02 -0.2 0.0 22 45 76 99 73 107 0.76

3 19 0.25 3.2e+02 0.9 0.0 21 45 103 127 93 134 0.82

4 19 0.0019 2.4 7.7 0.0 21 46 131 156 123 162 0.86

5 19 0.055 71 3.0 0.0 21 44 159 182 155 186 0.89

6 19 0.035 44 3.7 0.0 21 45 187 211 182 218 0.85

7 19 0.093 1.2e+02 2.3 0.2 21 44 215 238 211 242 0.86

8 19 0.033 42 3.8 0.0 20 44 242 266 231 270 0.84

9 19 0.083 1.1e+02 2.5 0.0 21 47 271 297 267 303 0.85

10 19 0.72 9.2e+02 -0.5 0.1 21 45 299 323 294 331 0.85

11 19 0.28 3.6e+02 0.8 0.1 26 46 332 352 323 358 0.87

12 19 0.27 3.4e+02 0.8 0.1 22 41 356 375 353 381 0.73

13 19 0.05 64 3.2 0.1 21 45 383 407 379 415 0.84

14 19 0.98 1.3e+03 -1.0 0.1 21 45 411 435 407 438 0.86

15 19 0.026 33 4.1 0.0 21 46 467 492 454 499 0.83

16 19 0.15 1.9e+02 1.6 0.0 21 45 495 519 488 527 0.83

17 19 0.0055 7 6.2 0.1 22 46 580 604 571 612 0.88

18 19 0.15 1.9e+02 1.6 0.0 27 44 616 633 612 637 0.91

19 19 0.021 27 4.3 0.1 21 46 638 663 634 666 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0042	5.3	6.6	0.0	21	52	47	78	44	80	0.89
2	19	0.55	7.1e+02	-0.2	0.0	22	45	76	99	73	107	0.76
3	19	0.25	3.2e+02	0.9	0.0	21	45	103	127	93	134	0.82
4	19	0.0019	2.4	7.7	0.0	21	46	131	156	123	162	0.86
5	19	0.055	71	3.0	0.0	21	44	159	182	155	186	0.89
6	19	0.035	44	3.7	0.0	21	45	187	211	182	218	0.85
7	19	0.093	1.2e+02	2.3	0.2	21	44	215	238	211	242	0.86
8	19	0.033	42	3.8	0.0	20	44	242	266	231	270	0.84
9	19	0.083	1.1e+02	2.5	0.0	21	47	271	297	267	303	0.85
10	19	0.72	9.2e+02	-0.5	0.1	21	45	299	323	294	331	0.85
11	19	0.28	3.6e+02	0.8	0.1	26	46	332	352	323	358	0.87
12	19	0.27	3.4e+02	0.8	0.1	22	41	356	375	353	381	0.73
13	19	0.05	64	3.2	0.1	21	45	383	407	379	415	0.84
14	19	0.98	1.3e+03	-1.0	0.1	21	45	411	435	407	438	0.86
15	19	0.026	33	4.1	0.0	21	46	467	492	454	499	0.83
16	19	0.15	1.9e+02	1.6	0.0	21	45	495	519	488	527	0.83
17	19	0.0055	7	6.2	0.1	22	46	580	604	571	612	0.88
18	19	0.15	1.9e+02	1.6	0.0	27	44	616	633	612	637	0.91
19	19	0.021	27	4.3	0.1	21	46	638	663	634	666	0.87

Sequence Information

Coding Sequence: ATGTTGAAAGCCAGCAAACAGAATTTCAACTGCAAGAATGGATCTAGTGGAAGCTTTTCGAAAATTCATCTTTGCGACGcatgtggaaaaatttttacctcgTTATTCAAACTCAAGACGCACCAACTTGTTCACACGGGGGAGAAACCCTTTGAGTGCTTAGTGTGCCAAAAAGGTTTCACATCTTCCAGTAACCTCACAAGGCACACGAGGCTCCATACAGGGGAAAAACCCTTTGAGTGCTCAGTGTGTCAAAAAGGATTTATATCTTCCAGTGATCGCACAAGGCACATGAGGACCCATACAGGGGAGAAACCCTTTGAGTGCTCAATGtgtcaaaaaggttttaaatCTTCCAGTGACCTCACAATTCATATGAGGACCCATACAGGGGAGAAACCCTTCGAGTGTCCAGTGTGTCAAAAAGGTTTTACATTTTCCGGTAATCTGACAAAACACATGAGGACCCATACGGGGGAGAAACCCTTTGAGTGCTCAGTGTGTCAAAAAGGTTTTAGAGCTTCCAATGACCTCACAATACATATGAGGACCCATACAGGGGAGAAACCCTTTGAGTGCTCAGTGTGTCAAAAAGGTTTTAGAGCTTCCAATGACCTCACAATACATATGAGGACCCATACAGGGGAAAAACCTTACAAGTGCTCAATTTGTTCTCAAAGCTTTAGACACAAATCAACACTCACATCACACATGAGGTCCCATACAGGGGAGAAACCTTTTGAGTGCTCAGTGTGTCAAAAAGGTTTTACATTTTCCGGTAATCTGACGAAGCACATGTGGACCCATACGGGGGAGAGACCCTTTGAGTGCTCAGTGTGCCAAAAAGGTTTTGTAACTTCCAGTGACCTCACAAGGCACACGAGGGTCCATACAGGGGAAAAACCTTACAAGTGTTCAAATTGTTCTGAATTTTTTAGCCGAAAAAGTACCCTCAGAAATCATATGCGCGTCCACACTGGCATACCATGTGGTAGCTGTACTATCTGCCAGAGACCATTTACCGACTTGAGCAATCTTATGAGGCACATGAAGATCCATACCGGGGAGAAATCCTTCGAGTGCTCAATTTGTTATCAGAAATTTAGGGTTAAATTTTCCCTCGTGTTACACATGAGGACCCATACAGGGGAAAAACCTTACAAGTGCTCAATTTGTTCTCAAAGCTTTAGACACAAATCAACACTCACATCACACATGAGGACCCATACAGGGGAGAAACCCTTTGAGTGCTCAAAGTGTCCAGAATCTTTTAGATGCAAAACCATTCTCACGAGACACATGCGCATCCACACTGGCATACCTTCTTGTCACTGTACTATCTGCCAAAGGCCATTTATAAACCCGAGTAATCTTAAAGTGCACATGAGGACCCATACAGGGGAGAAACCTTTTGAGTGCTCAGTGTGTCAAAAAGGTTTTACATTTTCCGGTAATCTGACAAAACACATGAGGACCCACACGGGGGAGAAACCCTTTGAGTGCTCAGTGTGCCAAAAAGGTTTTTCATCTTCTGGTGATCTCAAAAAGCACAAGGTGATCCATACTGGGGAAAAACCCTTTGAATGCTCAGATTGTCCAAAATCTTTTAGCCGTGAAGACCAACTCACAAGTCACATGCGTCTCCACACTGGCATACCAGGTAATCACTGTAGCATCTGCCAAAGGCCATTCACCTTGATCGGTAATCTTAAAAAGCATATGCTTACCCACACGGATAAAAAGCCATTTCAATGCTCGTTCTGTCAAAAAACGTTTAGAGAAAATGGCAATCTAGCAAGGCATATGCGCATCCACGAAGCGTCCACGGGCAAAGTTTGGGATCGATGCTCCATATGCCAAAAGGTATTTACCGATCCCAGTAGCTTAAAAAGGCACTTTCGGACTCACACAGGCGAAAAACCATTTCAATGCCCGATGTGCCcgaaaaaatttagtcaaaACAGCACCCTGAAAGTTCACATGCGAATCCATACCGTCTTGGTAGTGCAGTAG
Protein Sequence: MLKASKQNFNCKNGSSGSFSKIHLCDACGKIFTSLFKLKTHQLVHTGEKPFECLVCQKGFTSSSNLTRHTRLHTGEKPFECSVCQKGFISSSDRTRHMRTHTGEKPFECSMCQKGFKSSSDLTIHMRTHTGEKPFECPVCQKGFTFSGNLTKHMRTHTGEKPFECSVCQKGFRASNDLTIHMRTHTGEKPFECSVCQKGFRASNDLTIHMRTHTGEKPYKCSICSQSFRHKSTLTSHMRSHTGEKPFECSVCQKGFTFSGNLTKHMWTHTGERPFECSVCQKGFVTSSDLTRHTRVHTGEKPYKCSNCSEFFSRKSTLRNHMRVHTGIPCGSCTICQRPFTDLSNLMRHMKIHTGEKSFECSICYQKFRVKFSLVLHMRTHTGEKPYKCSICSQSFRHKSTLTSHMRTHTGEKPFECSKCPESFRCKTILTRHMRIHTGIPSCHCTICQRPFINPSNLKVHMRTHTGEKPFECSVCQKGFTFSGNLTKHMRTHTGEKPFECSVCQKGFSSSGDLKKHKVIHTGEKPFECSDCPKSFSREDQLTSHMRLHTGIPGNHCSICQRPFTLIGNLKKHMLTHTDKKPFQCSFCQKTFRENGNLARHMRIHEASTGKVWDRCSICQKVFTDPSSLKRHFRTHTGEKPFQCPMCPKKFSQNSTLKVHMRIHTVLVVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00368961;
90% Identity: iTF_00368961;
80% Identity: iTF_00368961;