Cflr009851.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:828610-832423[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.16 2.1e+02 1.5 0.0 25 44 44 63 30 70 0.85 2 8 0.0003 0.39 10.3 0.0 21 48 97 124 90 128 0.87 3 8 0.0064 8.1 6.0 0.0 21 44 125 148 123 155 0.88 4 8 0.00063 0.8 9.3 0.0 21 50 182 211 178 214 0.86 5 8 0.0034 4.4 6.9 0.0 23 46 212 235 208 241 0.87 6 8 2.9 3.7e+03 -2.5 0.0 26 45 244 263 236 266 0.76 7 8 0.00033 0.42 10.2 0.1 21 48 267 294 260 298 0.87 8 8 0.006 7.7 6.1 0.0 21 44 295 318 292 325 0.88
Sequence Information
- Coding Sequence
- ATGTTGACACCTACAATGAAAGTGAATAAGCCCAAAGTGCGTCGCTTTACGTGCAATTATTGCgtcaaatcattttttagtgTATGTGAATTGAATAAGCATATCCGCATCCATACAGGCGAAAAACTGTATAAATGTGAAGTTTGCAATAAATCTTTTACTCAAAAATCTAATCTAAAATCACATGCTCTAGTCCATAATAAGAAAGATCGGTACTTTCAATGCAACTATTGCCGTAAGAGTTTTCCTCAAACAAAAGAACTTGTAAAACACATTGGCATCCATACAGGCGAAAGGCCATTTTCATGCCAAATTTGTGGCAAAACTTTTACTCAAACCTCTAATCTAAACAAGCACATTCGCATCCATACAGGCGAAAAACCGTTTAATTGTGAAATTTGCGGCAAATCTTTCAATCAATCGTCTCATCTAAAATCGCATACTCTAATCCATAATAAGAAAGATCGGTACTTTCAATGCGACTATTGCCGTaagaatttttctcaaaaaaaagaacttgtaaAGCACATTCGCATCCATACAGGCGAAAGGCCATTTTCATGCCAAATTTGTGGCAAAACTTTTACTCAAACCGCTAATCTAAACAAGCATACTCACATCCATACAGGCAAAAAACCGTTTAATTGTGAAATTTGCGGCAAATCTTTCAATCAATCGTCTCATCTAAGATCGCATACTTTACTCCATAGTAAGAAAGATCGGTACTTTCAATGCAACTATTGCCGTAAGAACTTTTCTCAAAAACAAGAACTTGTAAAGCACATTCGCATCCATACAGGCGAAAGGCCATTTTCATGCCAAATTTGTGGCAAAACTTTTAGTCAAACTGCTAATCTAAACAAGCATATTCGCATCCATACAGGCGAAAAACCGTTTAATTGTGAAATTTGCGGCAAATCTTTCAATCAATCGTCTCATCTAAAATCGCATACTCTAATTCATAACAAGAAACATCGGTACTTTTAA
- Protein Sequence
- MLTPTMKVNKPKVRRFTCNYCVKSFFSVCELNKHIRIHTGEKLYKCEVCNKSFTQKSNLKSHALVHNKKDRYFQCNYCRKSFPQTKELVKHIGIHTGERPFSCQICGKTFTQTSNLNKHIRIHTGEKPFNCEICGKSFNQSSHLKSHTLIHNKKDRYFQCDYCRKNFSQKKELVKHIRIHTGERPFSCQICGKTFTQTANLNKHTHIHTGKKPFNCEICGKSFNQSSHLRSHTLLHSKKDRYFQCNYCRKNFSQKQELVKHIRIHTGERPFSCQICGKTFSQTANLNKHIRIHTGEKPFNCEICGKSFNQSSHLKSHTLIHNKKHRYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368981;
- 90% Identity
- iTF_00368981;
- 80% Identity
- iTF_00368981;