Cflr001219.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:1231850-1233556[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.017 22 4.6 0.1 21 45 65 89 57 92 0.82 2 13 0.00065 0.82 9.2 0.0 22 52 94 124 90 126 0.85 3 13 0.062 79 2.9 0.1 21 44 121 144 118 148 0.89 4 13 0.00015 0.19 11.3 0.1 21 52 149 180 146 182 0.86 5 13 0.00038 0.48 10.0 0.1 21 44 177 200 175 205 0.91 6 13 0.00052 0.66 9.5 0.2 21 46 205 230 202 236 0.86 7 13 0.00064 0.82 9.2 0.1 21 52 233 264 230 266 0.86 8 13 0.0019 2.4 7.7 0.1 21 52 261 292 258 294 0.86 9 13 0.002 2.6 7.6 0.1 21 52 289 320 286 322 0.86 10 13 0.00028 0.36 10.4 0.2 21 45 317 341 314 350 0.89 11 13 0.18 2.3e+02 1.4 0.2 22 44 346 368 342 376 0.86 12 13 3.1 3.9e+03 -2.6 0.1 27 50 495 518 491 521 0.74 13 13 0.27 3.4e+02 0.8 0.6 27 43 545 561 540 566 0.91
Sequence Information
- Coding Sequence
- ATGGCAGAAGATCCTAGTTCATCGAAAACATGGCATCATCGTTGTAACACGTGTGAAATGACTTTTATCTGTGCAGATGATCTTACGGaacacacatacatgcacacgggaaaaaaatctttccaatGCTCCGTGTGTTCGCAGACATACCGCTCAAGAAGTTACCTAGCAGTTCACATGCGAAGTCACACGGGAGAAAAACCCTATATTTGCAACATATGTCATAAAGCTTTTACGCGTAGTTATTCTCTTACTTTGCATATGCGTATTCACGTGGATGAAAAACCCCATGTTTGCAAAATATGTCACCAAGCTTTCAGGGGTGGTAGCAATCTTTCGCAGCATATGCTTGTGCACACTGATGAAAAACCCTATGTTTGCAAGGTGTGCCAAAAAGGTTTTAGGCGTAGTTATTCTCTTACTTTGCATATGCTTATCCATTCGGACGAAAAACCCCACGTTTGCAATGTGTGCCAAAAAGCTTTTAGGCAAGGACGAACTCTTCATTCTCACATGCTTATCCACACCGGTGAAAAACCCTACGTTTGCAAGGTATGTCATCGAGCTTTCAGGGATAGTAGCAATCTTTCGCAGCACATGCTTATCCACACGGGTGAAAAACCCTTTGTTTGCAACGTGTGCCAAAAAGTTTTTAGGCAACGACATACCCTTCATTCTCACATGCTTATCCACACCGGTGAAAAACCCTACGTTTGCAAGGTATGTCATCGAGCTTTCAGGGATAGTAGCAATTTTTCGCAGCACATGCTTATCCACACCGGTGAAAAACCCTATGTTTGCAAGGTGTGCCAAAAAGCTTTTAGGCAAGGACAAACTCTTCATTCTCACATGCTTATCCACACCGGTGAAAAACCCTACGTTTGCAAGGTGTGCCAAAAAGCTTTTAGGCAAGGACATACCCTTCATTCTCACATGCTTATCCACACGGGTGAAAAACCCCACGTTTGCAATGTGTGCCAAAAAGCTTTTAGGCAAGGACGAACTCTTCAGTCTCACATGCTTATCCACACGGGTGAAAAATCCCATGTTTGCAAGGTGTGCCATGAAGCTTTTAGACGCCACAATCTACTCAAGAAACACATGTTGGCCCATACGAATGAAAATTCCCTTGTTTGCAAGGTGTGCCATGAAGCTTTCAGGGATGATGGTGCCATTTCGATACACGACTGCCCACAAATACACAAGGGACCGAAGCCTTCCGAGACCAGATCAATGAGTACCCCAACATTCAGTGCAAATGGTACTCTCACGTCGCAGGTGTGTGCCCATATCAACTCGAAATGTCAGACATCCTCCAGTCAAAACGAGGACCTCGTGCTTAAGGTGGACCCTAAACTCAATTGGCCATCgcaaacttcagtcaaaaaaaggGGCCTTGCAGGGTCCACTCAACGATGCAAATCCATCTGGTGTGAAACTAGTATTGTCGAAAATGATGATCTTGCTTGGCAGTCCTTCGACTGCGACGAGTGCCAAGggacttttcccgatgaaagcAGCCTTAGGCATCACAAATATGTTTACCATTTCTACCGATGTTCGCTGTGTTCGGAAACTTTTAGATTAAACTGGGATCGCTCGACGCACATGGCCCTTTGGCATTGCTACCGATGCCATTTGTGCCATAAAATTTGCACCACATCCTCTGATCTTAAGAGACACGAATGGGAAGCTCACGGACTTTGA
- Protein Sequence
- MAEDPSSSKTWHHRCNTCEMTFICADDLTEHTYMHTGKKSFQCSVCSQTYRSRSYLAVHMRSHTGEKPYICNICHKAFTRSYSLTLHMRIHVDEKPHVCKICHQAFRGGSNLSQHMLVHTDEKPYVCKVCQKGFRRSYSLTLHMLIHSDEKPHVCNVCQKAFRQGRTLHSHMLIHTGEKPYVCKVCHRAFRDSSNLSQHMLIHTGEKPFVCNVCQKVFRQRHTLHSHMLIHTGEKPYVCKVCHRAFRDSSNFSQHMLIHTGEKPYVCKVCQKAFRQGQTLHSHMLIHTGEKPYVCKVCQKAFRQGHTLHSHMLIHTGEKPHVCNVCQKAFRQGRTLQSHMLIHTGEKSHVCKVCHEAFRRHNLLKKHMLAHTNENSLVCKVCHEAFRDDGAISIHDCPQIHKGPKPSETRSMSTPTFSANGTLTSQVCAHINSKCQTSSSQNEDLVLKVDPKLNWPSQTSVKKRGLAGSTQRCKSIWCETSIVENDDLAWQSFDCDECQGTFPDESSLRHHKYVYHFYRCSLCSETFRLNWDRSTHMALWHCYRCHLCHKICTTSSDLKRHEWEAHGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368987;
- 90% Identity
- iTF_00368987;
- 80% Identity
- iTF_00368987;