Cflr002999.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:1787282-1792806[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.2 1.3e+02 2.7 5.3 2 23 250 272 249 272 0.96 2 20 0.53 22 5.1 4.8 1 23 347 369 347 369 0.97 3 20 0.00017 0.0072 16.1 0.5 1 23 418 440 418 440 0.97 4 20 0.061 2.6 8.1 0.2 1 20 487 506 487 508 0.94 5 20 0.088 3.7 7.6 1.7 2 23 549 570 548 570 0.97 6 20 0.00078 0.033 14.1 1.1 1 23 609 631 609 631 0.97 7 20 0.00079 0.033 14.0 0.2 1 23 637 659 637 659 0.98 8 20 0.00012 0.0052 16.6 5.2 1 23 692 715 692 715 0.95 9 20 0.0092 0.39 10.7 0.3 2 20 724 742 723 745 0.93 10 20 0.00016 0.0065 16.3 1.0 2 19 772 789 771 794 0.89 11 20 0.00059 0.025 14.4 0.3 1 23 833 855 833 855 0.92 12 20 0.25 10 6.2 0.4 2 20 913 931 912 931 0.95 13 20 0.00059 0.025 14.4 0.4 2 23 950 971 949 971 0.97 14 20 0.00037 0.015 15.1 3.1 1 23 1007 1029 1007 1029 0.98 15 20 0.12 4.9 7.2 8.2 1 21 1049 1069 1049 1073 0.89 16 20 0.015 0.62 10.0 0.9 2 23 1133 1155 1132 1155 0.94 17 20 0.00043 0.018 14.9 1.4 1 23 1165 1188 1165 1188 0.90 18 20 0.00049 0.02 14.7 0.2 1 23 1194 1218 1194 1218 0.96 19 20 0.068 2.8 8.0 0.8 1 23 1223 1246 1223 1246 0.94 20 20 0.011 0.47 10.4 0.4 3 23 1279 1300 1277 1300 0.95
Sequence Information
- Coding Sequence
- ATGGATGACGTGGTTGTGGTCTCGGATAGCTTGGAGCACGCCTGTAGGCTATGCCTGACGACCGGGCAGAAATGCTCCTCGATCTTTAATGTGCCCGATGCCAGCGTGCCCTTCGCCGAGAAGATCCGCGCCTATCTTTCCATTAAGgTCACATCAAATGACAAGCTGCCTACGCTAGTCTGCAGCTCTTGCATCAAAACTATAAACCACTGGCACACCTACAAAGATACGTGTCTAAAGGCCCAAGAAAAGCTTCAGCAATGGTTCAGCGGGAAAAGTACGACGGTTCATCCGCTTGTAACAGTAAAAGAGGAACCATTAGACGAAGAATGCATGAACAGTCATGTACAAGTTACAAGAACAGATATTAGTAATCATGTCGAAGCCAACACAGATGATGTCCAACAAAGCAATGCTGTGCCAACTACTAGCAGGGTGGATGAGGGGATACCAGAGCAGCCTTCAAGATTCAGCGAAAGCATGGATGTTTTTTCCCCTGAAGTGCAAATCAAGACAGAACCCATGGATACAGAAGACGAAGATAATTGTAACATTGATGTCGAGTCGGTGAACAGCGGTGAACTTTTGCTCAACCCAATGGCCATTGCAGCTCAAAACGCCGGTAGCAACAATATGATGATGGAAGCTGATGCAGTAGAAAAATTCAGAACAAGGAGGTTTATCACCCGCAAGATCAAACGCCGTGGACCGCACACACATTTCAGGGGTGTCAAATTATTCAAGAAGAAATGTAGTCACTGTTCTATTTACCTACATTCAAAATATTCTTATGCTCAACATATGTCCAGATACCACGGCATTGTTAATAGCTTAGATAGTAATGACTGCAGTGAACCAGTGCAGCCAGTGCCTGTACAAAACAAGCAAAAGTCGAAGCTCACTCATCATGTAGATAGCGAAGAGCAAattgaaaattctgaaaacGTCGTAAATTCGGAGGATCTGGAATTTGCAAAAATGATTAAGACGGACCCTCTAACGCCCGTCCAAAAGACAATCATTGGTCAATTGAAAACATTCTCTTGCTACGCTTGCAAGCAGACCTTCTTTGACCGCCGGCACACGTTAAATCATATAAGGCAGCACATGCCAGATCTCAGGCCGTACACTTGTATTGCCTGCCTTACAGAGTTCTCGGATAGGTCGATGTACAAGCTGCATTGTGGAGCATCGTTCGAGTGTGCCATGAAAATCGCACTCGTAGTTCCGAAAATAGGATACGAGAAGTACTTTACTTGCAATATGTGCCTCAAGGCGTTCAACAATCGTCGGGAACTGTTGACACATCTCGCGATCCATGCTGATAAGCAACACAAGCAGCTGTCTCAGCCCATCCGCTCTCCTGGCAAGTTGAACTCTTCAGGTGTACCTGGTACCGGTCCACAGTCTCATTCCGTACCAGCTGGACCGTACATGAATGGTGATCCAGCTCACAATCACATGTGCGATCTTTGTGGTATGATTTACAGGTACAGGCCCAATATGGTCAAGCATCGCGATCTTTGTAGCACACTGCTGGAGAGCATAAGAACTTCGTACCGTTGCATCCAATGTAACATGACCTACCTtgtgtttaaaaagttttatactcATATTGTCAATGAACACAAGAAGCGCGAAATCACCTGCTTCATTTGCCACGAAAAATTCTTGAGTCCAGATGAGTTTTTGGCACATCACGAAACACACCGGGTATACTCTGGCAAGGACAATTCTGCGAGTCAAGAGCAACAAGAGATGGATGGCAATTATTCTGCAGATTCCCTGGATGCCTCGAACCATTTGGCGGATACCGAAGAAAAGTTCAATTGTGCACTCTGTGGCGAAAACTTTGACACCAAGCACGAGCTGAGCGAGCATCGCAACCTCCATTTGAAAGTTAAGATTTACTCTTGCGTAGTCTGTCGCAGTATGTTCAGCAGTTCAATTGCTCTTGAGTCGCACATGAAGGTGCATGGATTTGATGACGCCTCCAAGCAAACTAACAACGCCGGCAACAATGCGCTCAACGAATCAGCTGTATCGGCTGCATCGGATCCTGGCCCTGGTCTTCATCATTGCTATCAATGTGGCAAAAATTTCTCAAACTATGCCAATCTCAAGCGCCACGAAAGAAATCTCCACTTGAAGGTTCAACAGAAGATTTGGACGTGCGATATTTGTAAAGATTCATTCACCTCTTCTCAAGAACTTGAAAAACACAGATGGGTTCATAGCAGACGCTCTCATCAAATGAAAAACTCCGAAACGACTTCACCAAAGATCACTTCTCCTACCGGAAAACCGTTTCTGCAGTGCCCCAAGTGTCCCAAGACCTTCATCTATCAAGGTAATCTTATTCAGCACTGCCAGAACGTACATAAGGAAAATCACTTTGAGCGCATTGCTCGGCAATCGGCCCCACCTGCTCGACAATCGGCCCCACCGGCCCCTGCTGCAGCTCCAGCTCCACCTCCCCCTCGGCCTCGTGGTGGTTACGCTTGTGACATATGTGGTAAGTCATTTAAAGAAGAGCAATCGATGAAAACTCATAAAGGCTGGCATCTGCGGACAAACTACCGGCTGAAATCTGATCAAAACATTAGCATGGACGACAACCTACTTAGTGGTTCGGGAATAAATATGCCTGCGGATAATTCTCCAAAGCCGGCTAAAGCCCGTAAGTCCTTTCCCAATAATCCTTCGCAAAAACAGCTAAACAACATCGGTAGCTTGCAATGTCAGGTTTGCGATGATCGCTTCAACGATGTGACTACTCTTAGACATCATTTGTGGGACGTGCACTGTGCGCGCAATAAACCAGAGAGAATCTTTACGAGCGAGCTGCAGTGCGAGCTCTGCACGACTAGATTCAACGATGACGAATCCTTGCAAGAGCATATGAAGTGGCACTCGCAAAATCCTATCCTCAGCAATCACTCCATCAGTAAAACCAACAACGAGGTGACAAGTGAAGCTGGAACGACTAGTGCGAATTACATGATGAATAGGAAGTATTTCCGTTGCGAGACTTGCGGCAAAAACTACAGCAATCGCAAGATGTACGTGCGCCACAAAAAGCTACACAAAACTATGCCTGCGGCTACCATGATGAACTTGCAGTCGCTTCAAAAATCCAAGAGCCACTACTGCCACACTTGCCATAAAAACTTTGCCACAGATACAACGCTGAGGCGACACAAGGCCTCGCCATGCCACTTGAGCGTTGTGCGCTCGCAGACGCAGGCCCCTACCAAAAAAGATACCGTGGAGCCGCCGTCTGAGTATATGGACGTGTCCTCCGTTAAGGAAGAACCTGGCTCGGACTACTCTGGGTCTTCGTCGACCACGGGACAGTTGCAGATGCAGCCCGCCGTGtccaaaaaaaaggaagttacTTGCTCGATATGTAGAACCTCCTTCCCCAACTTGAGCGTTCTACATCAGCATAAGCAGCTCGTGCATCGGTCCATACCGAGCTCTCAAGGTTTTTTCCGCTGTAACGTCTGTGGTAAAAAGTTCCCTGGCCTCGCCAATCTAAAGCTCCACTTTGCTCATAAGCACAAGCCGAAATCTACTTTCCCTTGCACTTCGCCGGGCTGTAAGCTTATTTTCAACAGTAATAGCGCCTTAAAGAACCACGAGAATACGCATACTAGTATGATTTACAATTGTCTGCTATGTGACAGGCACGTGTTTTCCAAGGTCGCAATGACCAAACATATGCTTGCACTGCACAAAGAAGTTTATCACCAGTCTGGTGGTGAAAAAAGCTATCTTTGGACCGAGACCGACTTGACGAATTATACTGTAAAGAACTGCCAGAGCACGGCATGTCCTAAATGCAAGGTGAAGTATCCGAATTTGAAGGCGTTGAAAATACACTATCTGAAATTTCATGACAAAACATAA
- Protein Sequence
- MDDVVVVSDSLEHACRLCLTTGQKCSSIFNVPDASVPFAEKIRAYLSIKVTSNDKLPTLVCSSCIKTINHWHTYKDTCLKAQEKLQQWFSGKSTTVHPLVTVKEEPLDEECMNSHVQVTRTDISNHVEANTDDVQQSNAVPTTSRVDEGIPEQPSRFSESMDVFSPEVQIKTEPMDTEDEDNCNIDVESVNSGELLLNPMAIAAQNAGSNNMMMEADAVEKFRTRRFITRKIKRRGPHTHFRGVKLFKKKCSHCSIYLHSKYSYAQHMSRYHGIVNSLDSNDCSEPVQPVPVQNKQKSKLTHHVDSEEQIENSENVVNSEDLEFAKMIKTDPLTPVQKTIIGQLKTFSCYACKQTFFDRRHTLNHIRQHMPDLRPYTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPKIGYEKYFTCNMCLKAFNNRRELLTHLAIHADKQHKQLSQPIRSPGKLNSSGVPGTGPQSHSVPAGPYMNGDPAHNHMCDLCGMIYRYRPNMVKHRDLCSTLLESIRTSYRCIQCNMTYLVFKKFYTHIVNEHKKREITCFICHEKFLSPDEFLAHHETHRVYSGKDNSASQEQQEMDGNYSADSLDASNHLADTEEKFNCALCGENFDTKHELSEHRNLHLKVKIYSCVVCRSMFSSSIALESHMKVHGFDDASKQTNNAGNNALNESAVSAASDPGPGLHHCYQCGKNFSNYANLKRHERNLHLKVQQKIWTCDICKDSFTSSQELEKHRWVHSRRSHQMKNSETTSPKITSPTGKPFLQCPKCPKTFIYQGNLIQHCQNVHKENHFERIARQSAPPARQSAPPAPAAAPAPPPPRPRGGYACDICGKSFKEEQSMKTHKGWHLRTNYRLKSDQNISMDDNLLSGSGINMPADNSPKPAKARKSFPNNPSQKQLNNIGSLQCQVCDDRFNDVTTLRHHLWDVHCARNKPERIFTSELQCELCTTRFNDDESLQEHMKWHSQNPILSNHSISKTNNEVTSEAGTTSANYMMNRKYFRCETCGKNYSNRKMYVRHKKLHKTMPAATMMNLQSLQKSKSHYCHTCHKNFATDTTLRRHKASPCHLSVVRSQTQAPTKKDTVEPPSEYMDVSSVKEEPGSDYSGSSSTTGQLQMQPAVSKKKEVTCSICRTSFPNLSVLHQHKQLVHRSIPSSQGFFRCNVCGKKFPGLANLKLHFAHKHKPKSTFPCTSPGCKLIFNSNSALKNHENTHTSMIYNCLLCDRHVFSKVAMTKHMLALHKEVYHQSGGEKSYLWTETDLTNYTVKNCQSTACPKCKVKYPNLKALKIHYLKFHDKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368275;
- 90% Identity
- -
- 80% Identity
- -