Care013346.1
Basic Information
- Insect
- Copidosoma aretas
- Gene Symbol
- -
- Assembly
- GCA_030522625.1
- Location
- JAPYYV010013418.1:2668-7427[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.52 78 5.1 4.8 1 23 354 376 354 376 0.97 2 19 0.00014 0.021 16.3 0.7 1 23 425 447 425 447 0.98 3 19 0.061 9 8.0 0.2 1 20 497 516 497 518 0.94 4 19 0.043 6.4 8.5 3.4 2 23 559 580 558 580 0.97 5 19 0.00076 0.11 14.0 1.1 1 23 622 644 622 644 0.97 6 19 7.7e-05 0.011 17.2 0.3 1 23 650 672 650 672 0.98 7 19 0.00031 0.046 15.2 5.5 1 23 709 732 709 732 0.95 8 19 0.056 8.3 8.2 0.1 3 20 742 759 740 762 0.92 9 19 0.00015 0.023 16.2 1.0 2 19 792 809 791 814 0.89 10 19 0.00058 0.087 14.4 0.3 1 23 850 872 850 872 0.92 11 19 0.12 18 7.1 0.2 2 20 931 949 930 949 0.95 12 19 0.00028 0.042 15.4 0.5 2 23 968 989 967 989 0.97 13 19 0.00028 0.042 15.4 3.6 1 23 1025 1047 1025 1047 0.98 14 19 0.025 3.7 9.3 3.5 1 21 1067 1087 1067 1091 0.89 15 19 0.059 8.8 8.1 0.2 2 23 1155 1177 1154 1177 0.93 16 19 0.0026 0.39 12.3 2.0 3 23 1208 1229 1206 1229 0.91 17 19 0.00056 0.083 14.5 0.2 1 23 1236 1260 1236 1260 0.96 18 19 0.015 2.2 10.0 1.6 1 23 1265 1288 1265 1288 0.97 19 19 0.011 1.7 10.3 0.4 3 23 1321 1342 1319 1342 0.95
Sequence Information
- Coding Sequence
- ATGGACGAGGTCGTCGAGGTCGGCAGTGGTGGCGCCGGCCTGGAGGACGCCTGCAGGCTCTGCCTGTCGACCGAGCAGGACCGATCTTCCATCTTCGGCCTGCCCGACGCCAGCGTGCCCTTCGTCGAGAAGATCCGCACCTGTCTCTCCATACAGGTCACATCAAATGATAAGCTGTCTACGCTAGTCTGCACTTCATGCATCAAAAACATAAACCACTGGCACTCCTACAAGGCCACATGTCTAAGTGCACAGGAAAAACTTCAGCAATggttaagcaaaaaaaattcagttcaaCCGCGTGTAAGAGTAAAAGAGGAACCATTGCACGAAGAATGTGCAGACACTAATGTTCAAGTTACAAGAACAGAGTCTGACATTaGTAATCATGCTGAAGCAAACGATAGCAGGACAGGTGATGTCGCACAAAGCATTGCTGTGCCAACTACTAGCAGGATGGATGAGACAGTACCAGAACTGCCTTCAAGAATCAGTGAAAGCATGGATGTTTTCTCTCCTGAAGTACAAATCAAGACAGAACCCATGGATACAGAAGACGAAGATTATTGTAACATAGATGTCGAGTCGGTCAACAGTGGTGAACTTCTGCTCAATCCAATGGCTCTTGCTGCTCAAAACGCTGTCGGCAGCAATATGATGTTGGATGCTGATACAACGGAAAAATTAAGAACTCGAAGGTTTATCACCAAAAGGATTAAACGACGTGGACCTCACACACATTTCAGGGGTGCTAAATTATTCAAGAAGAGGTGCAGTCACTGTGCAATTTACCTTCATTCTAAACATTCTTATGCTCAACATATGTCCAGATATCATGGAATTGTAAATAGTTTAGACACTAGTGATTGTACCGATCCGGTGCAGCCAGCGCCTGTGCAGAACAAGCAAAAGTCGAAGCTGACTCACCATGTAGATAGCGAAGAGCCGatagaaaatgatgaaaatgtcgTTAATGCTGAAGATCTAGAATTTGCAAAAATGATCAAGACGGACCCTCTAACGCCTGTTCAAAAGACAATCATTGGTCAACTGAAAACGTTCTCTTGCTACGCTTGCAAGCAGACCTTCTTCGACCGTCGACACACGTTGAATCACATAAGGCAGCATATGCCAGATCTCAAGCCATACACGTGCATTGCTTGTCTCACAGAGTTCTCTGATAGGTCAATGTACAAGCTGCATTGTGGTGCATCGTTTGAGTGTGCTATGAAAATTGCTCTGGTTGTTCCAAAAATAGGTTACGAGAAGTACTTCACTTGCAACATGTGCCTCAAAGCGTTTAACAATCGTCGAGAGCTACTGACGCATCTTGCGATGCATGCGGATAAGCAACACAAACAGCTATCCCAGCCCATCCGCTCTCCTGCCAAGTTAAACTCTTTGGGTGCACCTGTCGCAAGTCCTCAGTCTCCTTCCAAAAGGACTGTACCAGCCGGACCATACATGGGTGGTGATCCGGCTCACAATCACATGTGCGATCTGTGCGGCATGATTTACAGGTACAGGCCCAACATGGTCAAGCATCGCGATCTTTGCAGCACTCTACTGGAGAGCATAAGGACTTCCTACCGCTGCATCCAATGCAACATGACCTACCTtgtgttcaaaaagttttaCACCCATATTGTGTACGAGCACAAGAAGCGCGAAATCACTTGCTTCATTTGCCATGAAAAATGCGCAACTGCAGATGAGTTTTTAGCACATCACGAAACACATCGGGTCTATTCCGGCAAGGAAAATTCTGCAGGCCACGAGCAACAAGAGATGGATCAGGCAGACGACAACTACTCGGCAGATTCACTGAATGCCTCGAACCATATGACGGACGCCGGGGAAAAGTTCAATTGCGCGCTCTGCGGCGAGAACTTTGAAACTAAGCACGAGCTCAGCGAGCATCGCAACCTTCATCTCAAGGTTAAGATTTACTCTTGCGTAGTCTGTCGCAGTATGTTCAGCAGTTCAAGTGCCCTTGAGTCGCACATGAAGGTGCACGGATTCGATGACGCCTCTAAGCAAGCGGACAATGCCTTTGCTGAACGCGGCAACAGCTCGCTCGACGAGTCAGCCCTATCCGCTGCGTCGGATCCGGGCACTGGTCTTCACCATTGCTATAGATGCGGCAAGAATTTCTCAAATTATGCCAACCTCAAGCGCCACGAGAGGAATCTACACTTGAAACCGCAGCAGAAAAGTTGGGCCTGCGACATATGCAATGATCAATTCACTTCTTCTCAAGAACTTGAAAAACATCGGTGGATACACAGCAGCCGACGCTCACATCAGGCAAAGAATACAGAACAGGTTGCTGCTCCACCAAAGATCACTTCTCCTACTGGAAAACCGTTCCTGCAGTGCCCCAAGTGTCCTAAGACATTCATCTACCAAGGTAATCTTATTCAGCATTGCCAAAATGTACACAAGGAGAATCACTTTGAGCGCATCGCTCGGCAATCGGCCCCACCTGCTCCAATTCCGACTCCAGCACCACCTCCACCTCCAACTCCTCCTCGGCCTCGTGGTGGTTACGCTTGTGATATTTGCGGTAAGTCATTCAAAGAGGAGCAGTCGATGAAGACCCATAAAGGCTGGCATCTACGTACAAGCTATCGTCTTAAGTCCGATCAAAACCTGAGCATGGATGATAATTTGTTAAGTGGCTCTGGTATGAGCATGACCGTGGATAATTCTCCAAAGCCGGCAAAAGCCCGCAAGTCCTTCCCCAATCACCCGTCGCAAAAGCAGCTGAACAACATTGGTGGAAGCTTGCAGTGCCAGGTGTGCGATGATCGCTTCAAAGATGTGACTACTCTTAGAAATCATTTGTGGGACGTGCACTGTGCGCGCAACAAGCCAGAAAAGATATTTACGGGCGAGCTGCAGTGCGAGCTCTGCACAACCAAATTCATCGATGAAAAGTCCTTGCAAGAGCACATGAAGTGGCACTCGCAAAATCCTATCCTCAGCAATCACTCTCCGGACAAAGCCAACAACGAGATGTCCAGTGATGCTAGAGCTTCCTCCGCGAATTACCTCGTCAACAGAAAGTTTTTCCGCTGCGAGACATGTGGCAAGAACTACAGCAACCGCAAGATGTACATGCGCCACAAGAAGCTGCACAAGTCCATGCCCGCGGCGACGATGATGAATTTCCAATCGCTTCAGAAATCCAAAAGCTTCTTCTGCCACGCCTGTCAGAAAAACTTTGCCACGGAAGCAACGCTCAGGCGTCACAAGGCCTCACCGTGTCACTTGAACGTCGCGCGCTCGCAGACGCAAGCACCTGCCAAAAAGATCACGACCACCGCGATAGTGCACCAGCCACCGACCGAGTACATGGGCGTGTCCTCCGTTAAGGAAGAACCTGGTTCCGACTACTCTGGGTCTTCATCGACCACGGGCCAGTCGCAGATGCAGCGCATGACCAAGAAAAAGCCCGTTACGTGCTCCATCTGTAAGACTATCTTCCCCAACATGAGCGTTCTGTACCAGCACAAGCAGCTCGTGCACAAGCAAGTGCCCTTCAGCACCATTCATCAGGACAAATCAGTCCCTGCGAGGAAGTTTGCACCCATGCCAAGTGCCGAAGGTCTTGTGTGCTGCAACGTGTGTGGCAAGAAGTTCCCCGGCCTCGCCAATCTCAAGCTCCACTACGCTCACAAGCACAAACCCAAGCCTGTAACTTTCCCTTGCAGCTCGCCGGGCTGTAAGCTCATTTTCAACAGCAACAGCGCGTTGAAGAATCACGAGAACACACACACgagtataatatacaattgTCAGCTGTGCGACAGGCATGTGTTTTCTAAAGTTGCGATGACAAAACACATGCTCTCATTGCACAAGGAAGTATATTCACAGTCGGGTGTGGACAAAAGCAATCTCTGGACTGAGACTGACTTGACGAATTATACTGTGAAGAATTGCCAGAGCACGGCTTGTCCCAAATGCAAGGTCAAGTATCCTAATCTGAAGGCGTTGAAGATACATTATCTCAAGTTCCATGACAAGACATAA
- Protein Sequence
- MDEVVEVGSGGAGLEDACRLCLSTEQDRSSIFGLPDASVPFVEKIRTCLSIQVTSNDKLSTLVCTSCIKNINHWHSYKATCLSAQEKLQQWLSKKNSVQPRVRVKEEPLHEECADTNVQVTRTESDISNHAEANDSRTGDVAQSIAVPTTSRMDETVPELPSRISESMDVFSPEVQIKTEPMDTEDEDYCNIDVESVNSGELLLNPMALAAQNAVGSNMMLDADTTEKLRTRRFITKRIKRRGPHTHFRGAKLFKKRCSHCAIYLHSKHSYAQHMSRYHGIVNSLDTSDCTDPVQPAPVQNKQKSKLTHHVDSEEPIENDENVVNAEDLEFAKMIKTDPLTPVQKTIIGQLKTFSCYACKQTFFDRRHTLNHIRQHMPDLKPYTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPKIGYEKYFTCNMCLKAFNNRRELLTHLAMHADKQHKQLSQPIRSPAKLNSLGAPVASPQSPSKRTVPAGPYMGGDPAHNHMCDLCGMIYRYRPNMVKHRDLCSTLLESIRTSYRCIQCNMTYLVFKKFYTHIVYEHKKREITCFICHEKCATADEFLAHHETHRVYSGKENSAGHEQQEMDQADDNYSADSLNASNHMTDAGEKFNCALCGENFETKHELSEHRNLHLKVKIYSCVVCRSMFSSSSALESHMKVHGFDDASKQADNAFAERGNSSLDESALSAASDPGTGLHHCYRCGKNFSNYANLKRHERNLHLKPQQKSWACDICNDQFTSSQELEKHRWIHSSRRSHQAKNTEQVAAPPKITSPTGKPFLQCPKCPKTFIYQGNLIQHCQNVHKENHFERIARQSAPPAPIPTPAPPPPPTPPRPRGGYACDICGKSFKEEQSMKTHKGWHLRTSYRLKSDQNLSMDDNLLSGSGMSMTVDNSPKPAKARKSFPNHPSQKQLNNIGGSLQCQVCDDRFKDVTTLRNHLWDVHCARNKPEKIFTGELQCELCTTKFIDEKSLQEHMKWHSQNPILSNHSPDKANNEMSSDARASSANYLVNRKFFRCETCGKNYSNRKMYMRHKKLHKSMPAATMMNFQSLQKSKSFFCHACQKNFATEATLRRHKASPCHLNVARSQTQAPAKKITTTAIVHQPPTEYMGVSSVKEEPGSDYSGSSSTTGQSQMQRMTKKKPVTCSICKTIFPNMSVLYQHKQLVHKQVPFSTIHQDKSVPARKFAPMPSAEGLVCCNVCGKKFPGLANLKLHYAHKHKPKPVTFPCSSPGCKLIFNSNSALKNHENTHTSIIYNCQLCDRHVFSKVAMTKHMLSLHKEVYSQSGVDKSNLWTETDLTNYTVKNCQSTACPKCKVKYPNLKALKIHYLKFHDKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00369048;
- 90% Identity
- -
- 80% Identity
- -