Cflr000084.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:785486-807536[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 8.4e-06 0.00035 20.2 1.0 1 23 224 246 224 246 0.98 2 31 0.0036 0.15 11.9 1.9 1 23 269 292 269 292 0.96 3 31 0.00087 0.036 13.9 0.6 2 23 299 321 298 321 0.96 4 31 0.00046 0.019 14.8 2.3 1 23 342 365 342 365 0.97 5 31 0.016 0.68 9.9 0.1 2 23 474 495 473 495 0.96 6 31 0.0014 0.058 13.3 0.1 1 23 501 524 501 524 0.93 7 31 0.00016 0.0067 16.2 0.1 1 23 592 615 592 615 0.96 8 31 0.0035 0.15 12.0 0.5 1 23 621 644 621 644 0.96 9 31 0.12 5.1 7.2 1.4 1 23 657 679 657 679 0.97 10 31 4.6e-05 0.0019 17.9 0.6 3 23 723 744 721 744 0.96 11 31 0.77 32 4.6 0.1 1 23 777 800 777 800 0.88 12 31 3.5 1.5e+02 2.6 1.8 2 23 807 830 806 830 0.92 13 31 4.2 1.8e+02 2.3 0.0 2 23 839 861 839 861 0.84 14 31 0.096 4 7.5 0.1 2 23 868 890 867 890 0.93 15 31 1.8e-05 0.00073 19.2 1.2 1 23 898 920 898 920 0.98 16 31 0.00028 0.012 15.4 3.3 1 23 994 1017 994 1017 0.97 17 31 0.007 0.29 11.1 0.4 2 23 1024 1046 1023 1046 0.95 18 31 0.00096 0.04 13.8 4.8 1 21 1083 1103 1083 1104 0.94 19 31 0.0036 0.15 12.0 1.8 2 23 1118 1139 1117 1140 0.93 20 31 3.3 1.4e+02 2.6 3.2 1 23 1143 1165 1143 1166 0.94 21 31 0.021 0.89 9.5 0.8 2 23 1173 1196 1172 1196 0.91 22 31 1.3 55 3.9 0.2 2 23 1204 1226 1204 1226 0.95 23 31 5.7 2.4e+02 1.9 0.0 2 23 1233 1255 1232 1255 0.87 24 31 0.31 13 5.9 2.7 2 23 1264 1286 1264 1286 0.96 25 31 0.21 8.9 6.4 0.8 2 23 1292 1314 1292 1314 0.93 26 31 0.054 2.3 8.3 0.4 1 23 1384 1407 1384 1407 0.96 27 31 0.013 0.53 10.2 2.0 1 21 1438 1458 1438 1459 0.94 28 31 0.43 18 5.4 1.9 2 23 1559 1581 1558 1581 0.94 29 31 0.61 26 4.9 0.4 2 23 1588 1610 1587 1610 0.95 30 31 0.23 9.6 6.3 1.8 1 23 1621 1643 1621 1643 0.97 31 31 0.054 2.3 8.3 0.2 3 21 1652 1670 1651 1671 0.94
Sequence Information
- Coding Sequence
- ATGCAGCCCCTCATACCGAAGGAAAGGTACCACGAGCTGTGCAGGCTCTGCGCGACTGTCGATGCCGTCAAGATGGACCTGTTCGGTCTGGAAGGCAAGAAACGACAGCTCGTCGAGAAGATACAAACGCTTCTTCCATTCAAGATAGAAGAAGACGACAAGCTACCAAAATGCCTTTGCTACAGATGCATGTACAAGCTGGAAAAGTTCTTTGGCTTCAGGCTGGCTTGCATCAATGCAAAAGAGGTCCTATCGAAACATGCGGAGACGCTCGAGTCATCACCGACACACATCAAACAGGAGGACGGGGACATGGAGCCGTACTCGGAACTGCGCATGGAGTTGCTCAAGCACAAGGACGGTGCTCCGCTACTCATTCCCGAGGCGTCTGTCGTCAATCCGAACGCCGCCTTGGGCACTCCCCCGAGGCTCAAGTCAGACACGGAGCTCGATATCGAGGACACCATAATGGACCAGCATCACGACATGGACGACCACAAGTCGGACGAGTACGAGATGGACATGGAAACAAACCCGAGCGATTTCCTCGAGATGAGCGCGATGGTGGCTGAGGAGGATAACGCCCTACCCCAGCCGTCAAAGTCAACAGCGAAGAAGCAGCAACAGCAGTCCGAGGTCTTCCAGCACCGCAACGAACAGCACGAGGTCTACGTCTGTTCGCTCTGCAACAAGGCCTTCAGCTCCAAGGGCCACTTATCACTTCACGCTCGCATTCATGTCGGGGCGGGAGATGTCATCGGTGAAAAGGTCATCACGGACGATCATACCTCGTACAAGCGGCCATATCAGTGCGATCTCTGCAACAAGTCGTACTCAACCGCCAAGCATCGCTGGGGACACGTTTCCACAACGCACAGGGGCCATCCAGCAGTTACGTGTGGCTTTTGTTCGCGCATCTACTCGACGCGCACAAATCTCGAGGAGCACATAAAGTCGAGGCATGCGGGACAGCCTCCGCCCCCGGAGATGGCGACCCAGTATGCTCAGCAGCACGACTCGCGCTACCAGTGCAAGACCTGTCCAAAGATGTACGCCAACATTACCGATCTCAACAAGCACAGCAGAGTCTGTCACAGCGAGCAGCAGCGCAGAGATGCCGCAAATAGCAGCTACAATCCATCAAACTTTTGTAAGTCTAAACTGACGACTAAGCTCAAAAACGCGTTGGATCCGAATTCGGACATGTCAAGCATGGATTCCGACTACGAGAACAAGGACTACAAGAGCGCGGAAGCTAAGCTCGCCAAAAATCCTCATTTGACCATTCTCAAGCAAGCTCTGATCAAGGGTGAGATCGTGAAAAAGGAGTACGATGAGAGACAGAAGATGTTGAGCAAAGCTAAGAAACAAGCCAATGCAACCAATAGAGatAACCAAGATTTAGATATGAAGAGATGGTACTGCGAAGCCTGCCCTCTTAACTTTGCCACAGTTGATGAGCTGAAGCAGCATGAAAAAACTCATGACGCCGAGAAGCCCTACATTTGCCTTCTGTGCGAGAAAGACTTTGCTGTGAAATCGTCTCTAAGCAGACACATCATCGCATCGCACGGTGTCGATCCTACGCCTTTGGTCGAGAGTGATAAGTGCCTCAAAAAATCAATGCAAAATGCTAATGACCAGGCATTTATCAAGCTAGAGGATCACCATATTGCCAAAGAAAATTCTGTGTCTCCTTATTCTGATAATTTggataatgacgacgacgaaCACGAGAATGGAAATGACAACATGCTTGAGGTGGAGACAGTCTTTGTTTGTGAAATTTGTACACGCGATTTCAACGACCGTGCGTCACTGTGGCTACACATTCGAGCCACTCATAAAGAATACGCGGCGTTTGCTTGTGGAGTCTGCCTTAAAATATGTTCAGACAACGCCCAGTTACAAAATCACGTCAATATGTATCATGGAGGATCGAAGCTTGCCATGTCCGAACAGAGaagGTATAGCTGCACAATATGCGGTAGACAGCATGATTCGCGGAAAAAGCTCATAAACCACGTGTCGATTCACAACATTGACCCGAGCTACGATGCTTCGAGATACGTTCAACTGAATACAAACTACTACAACGAAAATATGAATAGTAACGAGGGCAATGAGCTTATCATGGACTGCGACGAGGAGAGCGAAAAGATTGACTGCTACATCTGCTACAAGTCATTCCCTAGCGAAGATCATCTCATTCGGCATCAAAGAAACGCCCACAAGACTGATGGTAACATACCATTGGGCGAGTACAGCGGCAACGGTGGCCCAACTGGACAAAATGGCAGTGTCAACCGAGCTCAGTACCATCTGTTTTTCGTATGCGAGCTCTGCGGCAGTTCGTATCCCAGCAAATGGGAACGATGGCTGCACGTGAGCGGCATGCATGGCAATGAACCGTCAATTAGGTGCGAGCACGACGACTGCGCCAAGATTTTTGCCACAAAGACGTTACGCAACGAGCACGCGCAACACCATCAGCTGCAGGGCAGTTCTCCCAACACCTGCGAGATTTGCGGTAAACTGTGGGGCAGTCGAGTTGACTATTGGAAACACGTTATGGGTGTACACTCCGATACCGTGCCCCTGATTTGCGGCGTGTGTTTGAAAGTCTTCCCCGACGTGATGCAGCTCAGCCAGCACGTAAAACAAAAACACTGGCCCTTGACCACTGGTGACTTTAGTTGCGACATCTGCGGTAGGCCTTACTccaacaaaagtaaaatgtcGAGGCACAGAAAAATCCATGGCCTTGACGGCGAAGTCTTCAATCCAGCTTCCACCAACAGTAGTTTGATCATTCACGATGCCATGAACGAAGTTTCCCTAGAGTCGCATCAAATGGACAACGGCCTGCCTCAACCGATTGAGCCAGTGTCGATGGATCTTAGCTGCGAAATGTGCGGTGACCTCAAGTTCCCCTGTCTTGAGGATCTCAGCACCCATCGAAAAGTTGCACACAATCTTTTCCCCTGTGATCTGTGCAACAAGTGCTACGGACGCACGTCGCATCTGTGGAAACACGTAAACCGTGTGCACAAGGGCCACGAAGATATCACCTGCCGTTACTGTTTAAAGACGAGTGCCTCCCGGGATCATTTGGCTGCCCACATCGCCAAGATTCATCGTTACGAGCCTGAAGTGAAAAATGACGTGTCGATACAGAGTTTCAACAGCAGCAAAAGTACTAACCTGTACAACGATACGGCCTCGGCCAATGAGGAAGATGGCCTGCACTTCTGCGAAAAATGCAACAAGTCCTTCCACAAGCGCTATTTGCTGCGTCGTCATATGAAGGGCTGTCAAAACTATCGAAAGGATCCAGGTGCGCTGCTTACTCGGTGCCGAGCATGCGAGCGAATCTTCAAGGATCGAGCAAGTTTACAGAAACATATTGAAAACCATCACACCCTTTACGACTGCCATCTCTGCAAAGAGACCATCACCTCGAAACTTGGCATCATGACGCACAACCGGATGCATCACATGCACCACCCGGATCTCACTTGCGAGCTCGAGAGTTGCCGCAAGCTCTTCAGGACGAAAGATGATCTAGAGTCTCACCGCAAGGATCATAAGCACCACGGTAACCCGAACGTCTGCGACTTTTGCGGCGACACTGTTGAAAACAAGCTCAAACTCAAGATGCACATTCTGAGCTTGCACAGAAACGAAATCGGCGTCTCGTGCGGCATTTGTTTGATACCAATGAACGATCCCAAAGATCTCAAGAAGCACGTCGAAGATAGTCACCCCGGTGTTCTGGACAGACCCAATACGTGCCAAGTCTGCGGCAAACAGTATGCTTCGAAATGGAAGGCATTCGATCACACGAAAAAGTGCCACGGCAAGGTTTTCCGTACGTGCAAACAGTGCCTAGCTGTCTTCACGACGGACGTGGATCTGCGCTCGCACTACGAGCACGTGCACAACATTCCCAAAGACCAACTGGACGCGTTCCAGTACAGGCTAGAGGTTGCGGGTAATAAAATGGACGATTACGACCTTGGACCCGTTGGACCCGAGGTAGTCGTCAAAGAGGAGCCCGAGGAACTCGATTTCGATATAGAGCCGTTCGACGATGACAATGGCAACTCGAACGATTCGAAAAAACGCAGACGCTCGATGAGCGACACCTTCGACTGCGAGATGTGTCCGGAGATTTTCCTCAATCACGAACAATTGGCGTCTCATTACCGCAACGTTCACAATACCAATCCACAACGCATGTTCAAGCGAATGAAGGTCGAATCCTCGCCTCTGTTCAAAGCTAAGAAGAAGATCCGCGATCGCGAAAACTACGAGTGTAAAAACTGCCAAAAACAGTTCTGCACCAAGGTCCTGTATCTGGACCACGTGAACATGTGCACGCGCAAGTCGGTAGCGCCGACAACGTCGATACTTGAGGCTCACCTCAAGGGCAACAgtcagcaacaacagcagcagatGATCAAGCGCGAAGAGCCGGAGCCGATGCTCTGCGAGACGAATCTCAACATTCCAGACTTCAATCTGTTCGAGGACATCAACATGCAGTTATCGGGTCAAAAGCCAGTGCCTAGTCTCATGCCTCTTGGCGGTGGTCAGGCTTCCGGTAAGTCGTCCAAGTATTCGCGCAAAGACTCGCGTAAAGTGTACGACGAGTCCACAAACACCGAGTGCACTTGTGAGGTCTGCGGAAAACAGTGGCCTGCCAAGAAACACTTGTGGCAGCATCTGATTCGCTTCCATCGCTCCGAGGCCGCCGTCACCTGTGGAGTTTGTCTCAAGCTCTGTGTTACGTACGACGATCTCTCCGAGCATCTGAAGAACATACATCCGTCTATTTTGTCGACCGCGGGCAACAACTTTACTTGCAAGATATGTGGTCGTTATCACAATGCGCGAAGCAAACTCTTGCTTCACATGAGCATACACATCAATTGCAAGGGCAATATTCTGTGTCAGCGTTGTAACCGTACCTTCGAGAACGACGAGAAGCTCAAGGAGCACATTGCCACGTGCATGGGAGCCCGAGAAGGTGATAATGCCAGTGAATCGCTGATATCCAAAGAAGATAACGAGGAAAAGGGCAGTCTCATCGGCGATGAAGACGACGATGATGTCGAGGAAGAGAACGAGTTTGAGTCAGAGGAGGAGAGCGCAGCTCGGGACTCTGACAACAACGACAGCAGCTCCGACAAGTCCAACGACTCGGATAGTAGCAGTAACAGTAGCAACAGCTCGagcgacgatgacgacaacaGCGATGACGAGGATGGCAGTGACGCCGAGAGACCGAGGAACCATGAAGAGGACAGCAGCAAGGACTCGGGAAATGTCGTCGAGTTACCGCAGCCTGTCAACGTCAAGACCGAGGTCCAGACGATGAATCTTGGTgtagacgaagaagaagaagaagaagaagaggaagaagacgATGACGAGAAGCCGCGCTATGAGCCAGCACTGTCCGAGTCCGATGATGAAGACGACGATGCCCACAACGACGACGAGTATCTCAAgaagcagcaacagcagcagcagcgtgAGATCAAGGATCGTTACCAGCTCTCGCAGAAAGAGCCTATGCTGGTCAATTACTCGGAAGACGACGGACCACCAGCTCTTAGTCCAATGCTGGCCGCTCCTACACAAAGTAATGAGCACAATAACGACGGAAAAGAGCGCATTAGGCTAGTCCTCGACATGAAAAAGGAGCAGAAGAGCGATTCCAGCGCGGAAGAAAGTAGTAACGACGAAGATTCGGATGATGAGGAAGTCCCGCAAGCCCAAGTTGTCGATCCCAACAGTGCTTTCCACACGGACAACTCAAGGAGCAGCAACGAAGGTGAAGAGGAGCAAGAAGAAGAGCAAGAAGTCGAAGGAGAGCAAGAAGAAGGAGAAGTAGAGATTGCTGATGCAGAAGAAGAGGAAGATGTGGATGAACAGGAGCACGAGAGGCACGAAGAGCAAGAAGAGCACGATGGTCAAGAGATGGAAGAAGCTGAGGAGGAAGAAGTCATGAATGACGAAGCCGAAGTGCTAGAAGTCGATGAGAATGACATGCACAATTTAAATGGAACGGTGCTAATGCTGGCAAATGATGCGGATGGCAACCAGATTCTTATAGAGCGTAACATGGCAGACCTCGAGAACGACGACTCGGTCCATGACATGGCTCAGTATGTCTTCCAGGACGGCACGGGTTTTGCCCTGGAAGACTATGAGGCCATTGTAGAAGGTAGTCAGGAAGATGATGAGCAGCACCAGCAAAGTTTTGAGATGGAAATGAGCCAAGCTCAAgacgaggaggaagaagaagaagaagaagtcgAGGAGCAGGACGAAGAGATGCATGAAGAAGTCGAGGAAGAGGAAGGAGAAGAGGATGAAGTTGAGGTTGACGAAGTGCccgaggaggaagaggagggaGTCGTCGAGGATGACGTGAGTGCCAAAAGCTAA
- Protein Sequence
- MQPLIPKERYHELCRLCATVDAVKMDLFGLEGKKRQLVEKIQTLLPFKIEEDDKLPKCLCYRCMYKLEKFFGFRLACINAKEVLSKHAETLESSPTHIKQEDGDMEPYSELRMELLKHKDGAPLLIPEASVVNPNAALGTPPRLKSDTELDIEDTIMDQHHDMDDHKSDEYEMDMETNPSDFLEMSAMVAEEDNALPQPSKSTAKKQQQQSEVFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGFCSRIYSTRTNLEEHIKSRHAGQPPPPEMATQYAQQHDSRYQCKTCPKMYANITDLNKHSRVCHSEQQRRDAANSSYNPSNFCKSKLTTKLKNALDPNSDMSSMDSDYENKDYKSAEAKLAKNPHLTILKQALIKGEIVKKEYDERQKMLSKAKKQANATNRDNQDLDMKRWYCEACPLNFATVDELKQHEKTHDAEKPYICLLCEKDFAVKSSLSRHIIASHGVDPTPLVESDKCLKKSMQNANDQAFIKLEDHHIAKENSVSPYSDNLDNDDDEHENGNDNMLEVETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICSDNAQLQNHVNMYHGGSKLAMSEQRRYSCTICGRQHDSRKKLINHVSIHNIDPSYDASRYVQLNTNYYNENMNSNEGNELIMDCDEESEKIDCYICYKSFPSEDHLIRHQRNAHKTDGNIPLGEYSGNGGPTGQNGSVNRAQYHLFFVCELCGSSYPSKWERWLHVSGMHGNEPSIRCEHDDCAKIFATKTLRNEHAQHHQLQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVMQLSQHVKQKHWPLTTGDFSCDICGRPYSNKSKMSRHRKIHGLDGEVFNPASTNSSLIIHDAMNEVSLESHQMDNGLPQPIEPVSMDLSCEMCGDLKFPCLEDLSTHRKVAHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDITCRYCLKTSASRDHLAAHIAKIHRYEPEVKNDVSIQSFNSSKSTNLYNDTASANEEDGLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTLYDCHLCKETITSKLGIMTHNRMHHMHHPDLTCELESCRKLFRTKDDLESHRKDHKHHGNPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGICLIPMNDPKDLKKHVEDSHPGVLDRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTTDVDLRSHYEHVHNIPKDQLDAFQYRLEVAGNKMDDYDLGPVGPEVVVKEEPEELDFDIEPFDDDNGNSNDSKKRRRSMSDTFDCEMCPEIFLNHEQLASHYRNVHNTNPQRMFKRMKVESSPLFKAKKKIRDRENYECKNCQKQFCTKVLYLDHVNMCTRKSVAPTTSILEAHLKGNSQQQQQQMIKREEPEPMLCETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGGGQASGKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRSEAAVTCGVCLKLCVTYDDLSEHLKNIHPSILSTAGNNFTCKICGRYHNARSKLLLHMSIHINCKGNILCQRCNRTFENDEKLKEHIATCMGAREGDNASESLISKEDNEEKGSLIGDEDDDDVEEENEFESEEESAARDSDNNDSSSDKSNDSDSSSNSSNSSSDDDDNSDDEDGSDAERPRNHEEDSSKDSGNVVELPQPVNVKTEVQTMNLGVDEEEEEEEEEEDDDEKPRYEPALSESDDEDDDAHNDDEYLKKQQQQQQREIKDRYQLSQKEPMLVNYSEDDGPPALSPMLAAPTQSNEHNNDGKERIRLVLDMKKEQKSDSSAEESSNDEDSDDEEVPQAQVVDPNSAFHTDNSRSSNEGEEEQEEEQEVEGEQEEGEVEIADAEEEEDVDEQEHERHEEQEEHDGQEMEEAEEEEVMNDEAEVLEVDENDMHNLNGTVLMLANDADGNQILIERNMADLENDDSVHDMAQYVFQDGTGFALEDYEAIVEGSQEDDEQHQQSFEMEMSQAQDEEEEEEEEVEEQDEEMHEEVEEEEGEEDEVEVDEVPEEEEEGVVEDDVSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00368255;
- 80% Identity
- -