Basic Information

Gene Symbol
-
Assembly
GCA_030522625.1
Location
JAPYYV010000959.1:42561-53659[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 8.1e-06 0.0012 20.2 1.0 1 23 232 254 232 254 0.98
2 31 0.0035 0.52 11.9 1.9 1 23 277 300 277 300 0.96
3 31 0.00084 0.12 13.9 0.6 2 23 307 329 306 329 0.96
4 31 0.00031 0.046 15.3 3.2 1 23 350 373 350 373 0.97
5 31 0.024 3.6 9.3 0.1 2 23 476 497 475 497 0.96
6 31 0.011 1.7 10.4 0.1 1 23 503 526 503 526 0.91
7 31 0.00015 0.023 16.2 0.1 1 23 592 615 592 615 0.96
8 31 0.01 1.5 10.5 0.4 1 23 621 644 621 644 0.96
9 31 0.12 17 7.1 1.4 1 23 657 679 657 679 0.97
10 31 4.6e-05 0.0068 17.9 0.9 3 23 723 744 722 744 0.96
11 31 0.33 49 5.7 0.1 1 23 777 800 777 800 0.93
12 31 1.6 2.4e+02 3.6 0.8 2 23 807 830 806 830 0.93
13 31 4 6e+02 2.3 0.0 2 23 839 861 839 861 0.84
14 31 0.095 14 7.4 0.1 2 23 868 890 867 890 0.93
15 31 1.7e-05 0.0025 19.2 1.2 1 23 898 920 898 920 0.98
16 31 0.00066 0.099 14.2 1.5 1 23 994 1017 994 1017 0.97
17 31 0.05 7.4 8.3 0.5 2 23 1024 1046 1023 1046 0.95
18 31 0.00092 0.14 13.8 4.8 1 21 1083 1103 1083 1104 0.94
19 31 0.0035 0.52 11.9 1.8 2 23 1118 1139 1117 1140 0.93
20 31 1.1 1.7e+02 4.0 3.1 1 23 1143 1165 1143 1166 0.95
21 31 0.0058 0.87 11.2 0.7 2 23 1173 1196 1172 1196 0.93
22 31 1.2 1.9e+02 3.9 0.2 2 23 1204 1226 1204 1226 0.95
23 31 5.4 8.1e+02 1.9 0.0 2 23 1233 1255 1232 1255 0.87
24 31 0.29 43 5.9 2.7 2 23 1264 1286 1264 1286 0.96
25 31 0.17 26 6.6 1.3 2 23 1292 1314 1292 1314 0.93
26 31 0.12 17 7.1 0.3 1 23 1383 1406 1383 1406 0.96
27 31 0.021 3.1 9.5 2.0 1 21 1437 1457 1437 1458 0.93
28 31 0.41 61 5.4 1.9 2 23 1566 1588 1565 1588 0.94
29 31 0.59 87 4.9 0.4 2 23 1595 1617 1594 1617 0.95
30 31 0.22 33 6.3 1.8 1 23 1628 1650 1628 1650 0.97
31 31 0.052 7.7 8.3 0.2 3 21 1659 1677 1658 1678 0.94

Sequence Information

Coding Sequence
ATGGCTGCTGCTGATGCggacgcgacgacgacgacgacgacgacgacgacAGAGAAGGGATCCATTGCTCTGCTACGCTCGATCGATCGGCCCTTCTGCTTCggaaaattgcaaaatcgatCGGCAAAAATTATACACCAGCGGGACACTCTGATCGAGGAAGACGACAAGCTACCAAAATGCCTCTGCTACCGGTGCATGTACAAGCTGGAGAAGTTCTTCGGCTTCAGGCTGGCCTGCATCAATGCAAAAGAAATCCTCTCCAAACACGCGGAGACGCTCGAGCAGTCATCGACGCACATCAAGCAGGAGGACGGGGACATGGAGCCGTACTCGGAGCTGCGCATGGAGCTGCTCAAGCACAAGGACGGCGCCCCGCTGATCATCCCCGAGGCTTCGGTCGTCAACCCGAACGCAGCCCTCGGCACACCACCGAGGCTCAAGTCCGACACCGAGCTCGACATCGAGGACACCATTATCGGCCACTCGGGCCTGGACGACCAGCATCCCCACGACATGGACGACCACAAGTCGGACGAGTACGAGATGGACATGGAGACTAATCCCAGTGATTTCCTCGAGATGAGCGCCATGGTGGCCGAGGAGGACAACGCCCTGCCCCAGCCGCCCGCGTTGGCGGGAAAGCAGAAACAGTCCGAGGTCTTCCAGCACCGCAACGAGCAGCACGAGGTCTACGTCTGTTCGCTCTGCAACAAAGCCTTCAGCTCCAAGGGCCACCTGTCCCTCCACGCTCGCATCCACGTCGGCGCGGGCGACGTCATTGGCGAGAAGGTCATCACGGACGACCACACCTCGTACAAGCGGCCGTACCAGTGCGACCTCTGCAACAAGTCGTACTCGACCGCCAAGCATCGCTGGGGACACGTTTCCACCACGCACAGGGGTCATCCAGCAGTCACGTGCGGCTTCTGCTCGCGCATATACTCGACGCGCACGAATCTCGAGGAGCACATCAAGTCGAGGCATGCGGGACAGCCTCCGCCCCCGGAGATGGCGGCCCAGTACGCCCAGCAGCACGACTCGCGCTACCAGTGCAAGACCTGTCCAAAGATGTACACCAACATTACCGATCTCAACAAGCACAGCCGGGTCTGTCACAGCGAGCTGCAGCGCAGGGATGCCGCCAACAGCGGCTACAAGCCGTCGAACTTCTCCAAACTCAAAAACGCGCTGGAACCAGCTTCTGACATGTCAAGCATGGATTCCGACTACGAAGGCAAGGACTATAAGAGCGCGGAGGCTAAACTCGCCAAGAATCCTCACTTGACCATTTTGAAGCAAGCTCTGATCAAGGGCGAGAGCGTGAAGAAGGAGTACGACGAGAGACAGAAGATGCTGAGCAAAGCCAAGAAGCAGGCTAACGCGGCAAACAGGGATAACCAAGATTTGGACATGAAAAGATGGTACTGCGAAGCCTGTCCTCTTAACTTTGCCACAGTTGAAGAGCTGAAGCAGCACGAGAAGACTCATGACGCCGAAAAGCCCTACATTTGCATTTTGTGTGAAAAAGACTTCGCTGTGAAATCGTCCCTCAGCAGGCACATCATTTCATCGCACGGTGTCGATCCCACGCCTTTGCTCGAGAGCGATAGGTGTCTCAAAAAATcgatgcaaaatttaaatgaccaGCCGTTTATCAAGCAAGAGGACAGTATAACCAAAGACAATTCTTCGTCCCCCTATTCTGATAATTTGGATGAAGACGATGAACACGAAAACGGAAATGATAACATGCTTGAGGTGGAGACTGTATTTGTCTGCGAAATTTGTACGCGCGACTTCAACGACCGAGCGTCGTTGTGGTTACACATTCGAGCCACTCATAAAGAATACGCAGCATTCGCCTGTGGAGTCTGCCTTAAAATATGTTCAGACAACGCACAGTTGTTAAATCACGTCAACATGTATCACGGAGGAACGAAACTTGCCATGTCCGAACAGAGAAGGTATAGTTGTACGATATGCGGCAGACAGCATGACTCGCGGAAGAAGCTCATAAACCACGTATCGATCCACAATATCGATCCTAGCTACGATCCTGCGAGATACGTGCAGCTAAATACCAACTACTACAACGAAAACATAAACAGTAACGAGGGCAACGAGCTTATCATGGACTGTGACGACGAGAGCGAAAAGGCTGACTGTTACATCTGCTACAAGTCGTTCCCCAACGAAGACCATCTCATTCGGCATCAAAGAAACGCTCACAAGACTGACGGCAACATGCCGTTGGGCGAGTACAGCGGCAACGGCGGTCCAGCCGGACAGAACGGTAGCGTCAACCGAGCTCAGTACCACCTGTTTTTCGTGTGCGAGCTCTGCGGCAGCTCGTACCCTAGCAAGTGGGAACGATGGCTGCACGTCAGCAGCATGCACGTCAATGAGCCGTCAATCAGGTGCGAGCGCGAAGACTGTGCCAAGATCTTTGCGACCAAGACTTTGCGCAACGAGCACGCGCAACACCACCAGCTGCAAGGCAGCTCTCCCAATACCTGCGAGATTTGCGGCAAGCTCTGGGGCAGCCGAGTTGACTACTGGAAGCACGTTATGGGCGTGCACTCTGATACCGTGCCTCTGATCTGCGGCGTGTGCCTGAAAGTCTTCCCCGATGTGATGCAGCTCAGCCAGCACGTAAAGCTGAAGCACTGGCCCTTGACCAGTGGCGACTTCAGCTGCGACATCTGCGGCAGGCCGTACTCCAACAAGAGTAAGATGTCAAGGCACAGGAAGATACACGGCCTTGACGGCGAAGCCTTCAATCCAGCTTCGACCAACAGCAGTCTGATCATTCACGATGCCATGAACGAGGTTTCCCTCGAGTCGCATCCCATGGACAATGGCCTGCCCCAGCCGATCGACCCGATATCGATGGATCTCAGCTGCGAGATGTGCGGTGACCTTAAGTTTCCCTGCCTCGAGGATCTCAGTACCCATCGCAAGGTCGCGCACAACCTTTTCCCCTGCGACCTGTGCAACAAGTACTACGGTCGCACCTCGCATCTGTGGAAACACGTGAACCGCGTCCACAAGGGTCACGAGGATATAACCTGCCGCTTCTGTTTGAAGACGAGTGCCTCGCGAGAGCACTTGGCTGCCCACATAGCCAAAATCCACCGCTACGAGCCCGAGGTGAAGAACGACATGTCGTTACAGAGCTTCAACAACAGCAAAAATGCCAGCCTCTACAACGACACGGCCTCAGCGAACGAGGAAGATGGCCTGCACTTCTGCGAAAAGTGCAACAAGTCCTTCCACAAGCGTTACCTGCTGCGTCGTCACATGAAGGGCTGCCAAAATTACCGGAAGGATCCCGGCGCGCTGCTGACTCGGTGCCGTGCCTGCGAGCGAATCTTTAAGGACCGAGCGAGCCTGCAGAAGCACATTGAAAACCATCATACCCTGTACGAGTGTCATCTCTGCAAGGAGACCATCACCTCGAAGCTCGGCATAATGACGCACAACCGAATGCACCATATGCATCATCCAGATCTCACTTGCGAGGTCGAGAACTGCCGCAAGCTCTTCAGGACAAAGGACGATCTTGAGTCGCACCGCAAGGATCACAAGCATCACGGCAATCCAAACGTCTGCGACTTTTGCGGTGACACCGTTGAAAACAAGCTCAAGCTCAAGATGCACATCCTCAGCTTGCACAGAAACGAAATCGGCGTCTCCTGCGGCATTTGCCTGATACCCATGAACGATCCCAAGGATCTCAAGAAGCACGTGGAAGACAGTCACCCCGGGGTCCTTGACAGGCCCAACACCTGTCAGGTTTGTGGCAAACAGTACGCCTCGAAGTGGAAGGCGTTCGATCACACGAAAAAGTGCCACGGCAAGGTCTTCCGCACGTGCAAACAGTGCCTGGCTGTCTTTACAACGGACACGGATCTGCGCTCGCACTACGAACACGTGCACAACATTCCAAAGGATCAGCTCGACGCGTTCCAGTACAGGCTCGAAGTTGCGGGCAACAAGATAGACGACTACGATCTGGGATCCGTTGGGCCCGAGGTGGTGGTCAAAGAGGAGCCAGAGGAACTCGACTTCGACATGGAGCCGTTTGACGATGACAACGGCAACTCCAACGACTCAAAGCGCAGACGCTCAATGAGCGACACCTTTGACTGTGAGATGTGCCCGGAGATCTTCCTCAATCACGAACTCTTGGCTTCGCACTACCGGAACGTTCACAATACCAACCCGCAGCGAATGTTCAAGCGAATGAAGGTCGAGCCCGTACCAGTGGTCAAAGCCAAGAAGAAGATACGCGATCGCGAAAACTACGAGTGCAAAAACTGCCAGAAGCAGTTTTGCACCAAGATTCTGTACCTTGACCACGTGAACATGTGCACGCGTAAGTCGATACCGCCGACGACGTCGATACTCGAGGCTCACCTCAAGGGCAACAGTcaccagcaccagcagcagcagcaacaacaacagcagcagctaATCAAGCATGAAGAGCCAGAGCCCATGCTCTGCGAAACGAATCTCAACATTCCAGATTTCAATCTCTTCGAGGACATCAACATGCAGTTGTCCGGACAGAAACCAGTGCCTAGTAATCTCATGCCCCACGGTGGCGGTCAGTCCTCCAACAAATCGTCCAAGTACTCGCGCAAGGACTCGCGGAAAGTGTACGACGAGTCCACGAACACCGAGTGCACCTGCGAGGTCTGCGGAAAACAATGGCCCGCGAAAAAACACCTCTGGCAGCATCTGATTCGCTTCCATCGCTCCGAAGCCGCAGTCACCTGTGGAGTCTGTCTCAAGCTCTGTGTCACGTATGACGATCTCTCGGAGCATCTCAAGAACATACATCCGTCTATTTTGTCGACCGCGGGAAACAATTTTACCTGCAAGATATGCGGACGTTATCACAACGCGCGAAGCAAACTCCTGCTCCACATGAGCATACACATTAACTGCAAGGGCAACATTCTGTGCCAACGTTGCAACCGTACCTTCGAAAACGACGAGAAGCTCAAGGAACACATCGCAACGTGCATGGGAGCCCGGGAAGGTGAAGGTGACAATGAATTGCTGTCTAAAGATGATAACGAGGAGAAGGGCAGTCTCATCggcgacgaagacgacgacgacgatgtcGAGGAAGAGAATGAGTACGAgtccgaggaggaggagagcgcAGCTCGGGACTCGGACAACAACGACAGCAGCTCCGACAAGTCCAACGATTCGGATAGCAGCAGTAATAGCAGTAACAGCTCGAGCGACGATGACGACAACAGTGACGACGAGGATGGCAGCGACGCCGAGAGACCGAGAAACCACGAGGAAGACAGCAGCAAGGACGACTCGGACAATGTCGGCGAACTGCCGCAGCCTGTCAATGTCAAGACCGAGGTTCAGGCGATGAAACTCAAcgaagaggaagaagaggaggaagacgatgatgacgaaAAGCCGCGCTACGAACCAGCGCTGTCCGAGTCCGACGATGAAGACGATGACGATGCCCACAACGACGACGAGTACCTCAAGAAGCAGCAACAAGAGCAGCAGCGTGAAATAAAGGATCGTTACCAGCTCTCGCAGAAGGAACCTATGCTCGTCAATTACTCTGAGGACGACGGACCACCAGCTCTTAGTCCGATGCTGGCGGCTCCAACTCAAAGCAATGAGCACAATAACGAGGGAAAAGAGCGTATAAGGCTAGTCCTCGACCTAAAGAAGGAGCAGAAGAGCGATTCCAGCGCGGAGGATAGCAGCAATGACGAGGATTCGGACGACGAGGAAGTCCAGCAAGCCCAAGTTGTCGACCCCAACAGTGCTTTCCACTCGGACAACTCGAGGAGTAGTAACGAAGGTGAGGAGGAGCAAGAGGAAGAGCAAGAAGCCGAAGAAGAACAAGAGGAAGAAGTAGAGCAAGAAGTAGCTGAAGCAGAAGAGGAGGAAGATGTGGAAGTGCAGGAGCACGAGAGATCCGAAGAACAAGAAGAGCGCGATGGTCAGGAGATGGAAGAGGCCGAGGAGGAAGAAGGCATGAACGACGAAACTGAGGTACTGGAAGTCGACGAGAACGATATGCATAATTTAAATGGCACGGTGCTAATGCTGGCGAATGATGCGGACGGCAACCAAATTCTGATTGAGCGCAATATGGCAGACCTCGAGAACGACGACTCTGTCCATGATATGGCTCAGTACGTCTTCCAGGACGGCACGGGTTTCGCTCTGGAAGACTATGAGTCTATCGTCGAGGGCAGCCAAGAGGATGATGAGCAACACCAGCAAAGTTTTGATATGGAGATGAGCCAAGCTCAAGAAGATGAGGAGGAGGACGTTGAGGTTGAAGAGCAGGATGAAGAACTGCATGAAGAAGTTGAGGAAGAGGAAGGGGAAGAGGAAGAAGTCGAGGCTGAGGAGGTGCCCGAGGAGGAAGAGGAAGGAATCGCCGATAATGACGTGAGTGCCAAAAGCTAA
Protein Sequence
MAAADADATTTTTTTTTEKGSIALLRSIDRPFCFGKLQNRSAKIIHQRDTLIEEDDKLPKCLCYRCMYKLEKFFGFRLACINAKEILSKHAETLEQSSTHIKQEDGDMEPYSELRMELLKHKDGAPLIIPEASVVNPNAALGTPPRLKSDTELDIEDTIIGHSGLDDQHPHDMDDHKSDEYEMDMETNPSDFLEMSAMVAEEDNALPQPPALAGKQKQSEVFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGFCSRIYSTRTNLEEHIKSRHAGQPPPPEMAAQYAQQHDSRYQCKTCPKMYTNITDLNKHSRVCHSELQRRDAANSGYKPSNFSKLKNALEPASDMSSMDSDYEGKDYKSAEAKLAKNPHLTILKQALIKGESVKKEYDERQKMLSKAKKQANAANRDNQDLDMKRWYCEACPLNFATVEELKQHEKTHDAEKPYICILCEKDFAVKSSLSRHIISSHGVDPTPLLESDRCLKKSMQNLNDQPFIKQEDSITKDNSSSPYSDNLDEDDEHENGNDNMLEVETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICSDNAQLLNHVNMYHGGTKLAMSEQRRYSCTICGRQHDSRKKLINHVSIHNIDPSYDPARYVQLNTNYYNENINSNEGNELIMDCDDESEKADCYICYKSFPNEDHLIRHQRNAHKTDGNMPLGEYSGNGGPAGQNGSVNRAQYHLFFVCELCGSSYPSKWERWLHVSSMHVNEPSIRCEREDCAKIFATKTLRNEHAQHHQLQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVMQLSQHVKLKHWPLTSGDFSCDICGRPYSNKSKMSRHRKIHGLDGEAFNPASTNSSLIIHDAMNEVSLESHPMDNGLPQPIDPISMDLSCEMCGDLKFPCLEDLSTHRKVAHNLFPCDLCNKYYGRTSHLWKHVNRVHKGHEDITCRFCLKTSASREHLAAHIAKIHRYEPEVKNDMSLQSFNNSKNASLYNDTASANEEDGLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTLYECHLCKETITSKLGIMTHNRMHHMHHPDLTCEVENCRKLFRTKDDLESHRKDHKHHGNPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGICLIPMNDPKDLKKHVEDSHPGVLDRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTTDTDLRSHYEHVHNIPKDQLDAFQYRLEVAGNKIDDYDLGSVGPEVVVKEEPEELDFDMEPFDDDNGNSNDSKRRRSMSDTFDCEMCPEIFLNHELLASHYRNVHNTNPQRMFKRMKVEPVPVVKAKKKIRDRENYECKNCQKQFCTKILYLDHVNMCTRKSIPPTTSILEAHLKGNSHQHQQQQQQQQQQLIKHEEPEPMLCETNLNIPDFNLFEDINMQLSGQKPVPSNLMPHGGGQSSNKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRSEAAVTCGVCLKLCVTYDDLSEHLKNIHPSILSTAGNNFTCKICGRYHNARSKLLLHMSIHINCKGNILCQRCNRTFENDEKLKEHIATCMGAREGEGDNELLSKDDNEEKGSLIGDEDDDDDVEEENEYESEEEESAARDSDNNDSSSDKSNDSDSSSNSSNSSSDDDDNSDDEDGSDAERPRNHEEDSSKDDSDNVGELPQPVNVKTEVQAMKLNEEEEEEEDDDDEKPRYEPALSESDDEDDDDAHNDDEYLKKQQQEQQREIKDRYQLSQKEPMLVNYSEDDGPPALSPMLAAPTQSNEHNNEGKERIRLVLDLKKEQKSDSSAEDSSNDEDSDDEEVQQAQVVDPNSAFHSDNSRSSNEGEEEQEEEQEAEEEQEEEVEQEVAEAEEEEDVEVQEHERSEEQEERDGQEMEEAEEEEGMNDETEVLEVDENDMHNLNGTVLMLANDADGNQILIERNMADLENDDSVHDMAQYVFQDGTGFALEDYESIVEGSQEDDEQHQQSFDMEMSQAQEDEEEDVEVEEQDEELHEEVEEEEGEEEEVEAEEVPEEEEEGIADNDVSAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
iTF_00369008;
80% Identity
-