Cflr009238.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- Lztr1
- Assembly
- GCA_000648655.2
- Location
- NW:35993-42108[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.3e-15 8.9e-13 47.7 0.3 2 108 351 486 350 488 0.87 2 4 0.37 52 3.4 0.1 76 108 486 518 483 520 0.85 3 4 3.6e-17 5.2e-15 55.0 0.0 8 96 581 669 574 684 0.84 4 4 1.4 2e+02 1.6 0.1 76 100 683 707 678 714 0.81
Sequence Information
- Coding Sequence
- ATGGACAACAACTATCCTCCTGAGTGTTTGGTTCTGGACTTTGGGCCTTTCGAAACTGTCCACCGCTGGCAGCGAATGCCAGAATGCGACGAATTCGTTGGGGCcagACGTAGCAAACATACGGTTGTAGCTTACAAAGATGCAATTTATGTGTTTGGAGGAGACAATGGAAAGAGAATGCTAAATGACCTGCTACgttttgatgtaaaagaaaaGTCCTGGGGTAGAGCATTTGCTACTGGCCAACCACCAGCTCCTAGATACCATCACTCTGCTGTGGTACATGGGTGTTCTATGTTCGTTTTTGGAGGCTACACTGGTGATATTCACTCCAATTCCAACTTGACCAACAAAAATGACTTGTTTGAATATCGTTTCACAACTGGTCAGTGGGTTGAATGGAAGTTCTATGGAAAAACACCAGTTGCCAGATCAGCTCATGGTGCGGCAATTTACGATAATAAATTGTGGATTTTTGCCGGTTATGATGGAAATGTTCGTTTAAATGATATGTGGACTATATCACTATGTCCTAAAGATCCCAAGGTGTGGGAAAAAGTTATCCAATCTGGAGACTGCCCACCTACCTGCTGCAACTTTCCTGTGGTAGTAGCTAGAGAATCCATGTTTGTATTCAGTGGTCAGAGTGGTGCAAAAATTACCAACAgtctttttcaatttcattttcgGGAAAAAAGatggACGCGTATTTCAACTGAGCATATTTTACGGGGTACTCCACCACCACCAGCTCGACGCTATGGTCACACAATGGTAAGTTTTGACAGGCACCTGTACGTGTTTGGTGGTACTGCAGATAATACTCTGCCAAACGACCTTCATTGCTACGATCTTGATACTCAAACTTGGGACATTATAACTCCATCTTCTGATAGCGAGATTCCATCCGGCCGGCTATTTCATGCGGCAGCCGTAATCAGCGACGCAATGTATATCTTTGGCGGTACGGTGGATAATAACGTCCGCAGTGGTGAAACTTATCGCTTCCAGTTCTCTTCGTATCCCAAATGCACGCTGCACGACGACTTTGGCCGATTATTAAACCAGCGGCTGTTTTGCGACGTGGAGTTTATCGTGGGCGAAGAGGAAACTAAAATACCTGCCCATGTGGCTATGGTTGCGGCACGGTCTAAATTTCTTCGACAACACATTCGTGATGCTAAGGACAAGCGAGACCGAAAGCTAAAGAAAGAGCGGGGTAACGAAGTCATCAAATCCAAAGATTTGCCGTTGTTGGAGGTGAAACTGAAAGATGCGGTACCCGAAGCATTTGATATGGTTCTGAACTATATTTATACCGATCGCATAGATCCAACTCAAAAAATCGAGGACCCACCCAGTAACCAAATCGTTTTGCTGATGATGGATGTATATCGCCTAGCAAGGCAGTTTAATATGAAACGCTTGGAGCAGCTGTGTGTCCATTACCTCGACACCACAATAAATCACACCAACGTTTTGGAAGCACTGCGCAATGCTGCCCATCttgaattgtattttataaaagagatgtgcatgaatttcgtGGTGAGAGATAGTAATTACAATCAGATAATTATGAGCAAGGAATTCGAGGTGTTAGAACAACGTCTAATGGTAGAAATAATAAGACGAAAACAGGATCAGccgaaaaaaaattccttgaaaCAGTATGATCTGAGAACGGAAGTTGgAACGACGCTTGAGCAAGATatggaaatgtttttaaatagtattgGAAAAGAATTCTGCGACATAACGTTGATGCTCGACAGTAACCCGATACAATCACATAAAGCAATTTTGGCTGCTCGTTGTAGCTATTTTGAGGGGCTGTTCAGGTCATTTATGCCTGATAATAATACTGTTAATATACAAATTGGAGAAATGATTCCATCCTCAGAGTCATTCAGCTCACTTTTAAGATACATATACTATGCAGACGTCTCTATGCCTCCCGAGGACTCCCTTTATCTTTTCACCGTTCCAATATTTTATGGTTTCACAAATAATCGCTTGCAGGCCTTCTGCAAACAAAATCTCGAAATGAATGTTACTTTTGAAAAcgtaatacaaattttagagGCTGCTGATAAAATGCAAGctatagatattaaaaaatatgctttgaAACTCATAGTACTCAACATTCCAAAGGTGGCTAcattgccaaaaataaaaaatcttagtcGAGAACTTTTGCTTGATATAGTATTTGCAATGGCTGAAGAGAAAGGTGAGGCAGGTTCTTGTCAAGATATGTCGAATGATTGCTGA
- Protein Sequence
- MDNNYPPECLVLDFGPFETVHRWQRMPECDEFVGARRSKHTVVAYKDAIYVFGGDNGKRMLNDLLRFDVKEKSWGRAFATGQPPAPRYHHSAVVHGCSMFVFGGYTGDIHSNSNLTNKNDLFEYRFTTGQWVEWKFYGKTPVARSAHGAAIYDNKLWIFAGYDGNVRLNDMWTISLCPKDPKVWEKVIQSGDCPPTCCNFPVVVARESMFVFSGQSGAKITNSLFQFHFREKRWTRISTEHILRGTPPPPARRYGHTMVSFDRHLYVFGGTADNTLPNDLHCYDLDTQTWDIITPSSDSEIPSGRLFHAAAVISDAMYIFGGTVDNNVRSGETYRFQFSSYPKCTLHDDFGRLLNQRLFCDVEFIVGEEETKIPAHVAMVAARSKFLRQHIRDAKDKRDRKLKKERGNEVIKSKDLPLLEVKLKDAVPEAFDMVLNYIYTDRIDPTQKIEDPPSNQIVLLMMDVYRLARQFNMKRLEQLCVHYLDTTINHTNVLEALRNAAHLELYFIKEMCMNFVVRDSNYNQIIMSKEFEVLEQRLMVEIIRRKQDQPKKNSLKQYDLRTEVGTTLEQDMEMFLNSIGKEFCDITLMLDSNPIQSHKAILAARCSYFEGLFRSFMPDNNTVNIQIGEMIPSSESFSSLLRYIYYADVSMPPEDSLYLFTVPIFYGFTNNRLQAFCKQNLEMNVTFENVIQILEAADKMQAIDIKKYALKLIVLNIPKVATLPKIKNLSRELLLDIVFAMAEEKGEAGSCQDMSNDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087267;
- 90% Identity
- iTF_00368170;
- 80% Identity
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