Cflr002520.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- bab2
- Assembly
- GCA_000648655.2
- Location
- NW:4152205-4159821[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.2e-10 1.1e-06 27.7 0.1 1 38 396 434 396 438 0.93
Sequence Information
- Coding Sequence
- ATGGGCGAAGTAATACCGCAACACTACTGCCTGCGCTGGAACAATCACAAGTCGAACTTTGTGCTGGCGTTCGAGCAGCTGTTTGCCATCGAGGCCTTCACCGACGTCACCGTGGCCGGCTACGACGGACCCGCCATCAAGTGCCACAAAATGGTCCTAGCCGCCTGTTCCGCCTACTTTCAGGAACTGTTTATGAAAAATCCCTGCGAGCACCCCATCATCATACTCAGTAACGTCAAGCACATCGAGCTCAGGTCGATCCTCAACTACATGTACAAAGGCGAGGTCAACGTCGAGCGCAACGAGCTCGACGAACTCCTCAAAGTCGCGACTTTTCTCAAGGTGAAGGGTCTGGCGAGGGATTCGCAGGTCAAGTGCGAGGAGCCGGACAATTCGATCTCGCCGTCGCCAACGATCGGCAACAGCACGACCAGCAGCGTGGCCCACAGCAGCGGCTACATATCGCCCAACCACCTGCCAGCAGCTGCCCCGAGCTTCCTCAACTGCAGCAGCACCGGTGGCAGTGGCAGTGCTGGTGTtgccaacagcagcagcatcatAAACAacggcaccaccaccaccaccaccaccagcagcagcagcagcagcagcagcgccgTGATcagcaacaataacaacaataccagcagcagcaacaacaaccaCCACCACAATGGAAAATCCCTGCTCGAGAGTGCCTCGAGCCATATACCCTACTGGGCGGCTTTCCCGGGCATGACCAAGCCCAGCCACCACATCTACGGCGACAGCAAGTCCCTGCCCGAGGCGCCCCACCTCGTTCACCACCAACCGCAGCACCCGGTGCTGAGCAGCACCTACGAGAACTTGACCGAGAGCTCGCCCCTCACCAAGAAGAAGCACTCGAGCCACCTGCACTCGAACGCCATCCTCCGCAGCGTCTTGGCCGACAGCTCCCAACCGATGGGCATCGACCACCAGCAGTCCGAGCTCGGCCTCGAGCTGGCCTACAGCAACGCAACGAGCAGCAACGGGCTACTCCGCGACGCCGACAGGCGCAACAGCGCCGAGATGTCCGAGGACGAGAGGCGGAACAACACCTCGCCCAGGAACAGCTACCACGCGCCGGGCAGCAACGGCCACAGATcagGTAACGGGGGAGGCTCGTCGTCGACGAGGCCCGAGTGGAAGCGGTACAAGCAGTACACGCGGGAGAACATAATGGACGCGATGACCGCGGTGCGGGAGAAAAAAATGAGCGCCCTCCAGGCGGCCCGACAGTACAAGGTGCCCTCGCGCACCCTCTACGACAAGCTCAAGAAGGCCGGGATCTTACCATCGCGCAGCAGCGCCCCGCGCGGCACCTCCTCTGCCCAGACCGTGGCCAGCGGCATCGAGAGCAGCGCCTGCTTTCCCTACCCCTCGGGGGTCAACGGCAGCATTTACGGCAACCGGCCGAGCGCGATATGCAGCGACGCCATGTCCGAGCACGACGTCGACATGAACGGCTACAGCAGCGACAACGGCTACGGCAGGGACAACGACCTCACGGGCAGCAGCAGCGTCGGCGGCGACAACGAGTCCCACGACGAGGTCATGGACATGTCGAGGCGCACGCCCAGTCCACCCCCGACCGCCCTGCTCATGGCCCaacagcaccagcagcagctcGTCGCCACTGCCGATCTGAGCATGGAGGACGAGGTCGAGGACCTCTCGGTCAATCGCACCCCTAGGCTCGAGGCTGGCGGCTTGAACGACGTCAGTGTCATCGTGCCGACCGTCAAGAACCTGGGGCTCAAGAAGGAGGAAGAGCCAGGCGACGAGGACACCTTGGCTCGCGTCTGA
- Protein Sequence
- MGEVIPQHYCLRWNNHKSNFVLAFEQLFAIEAFTDVTVAGYDGPAIKCHKMVLAACSAYFQELFMKNPCEHPIIILSNVKHIELRSILNYMYKGEVNVERNELDELLKVATFLKVKGLARDSQVKCEEPDNSISPSPTIGNSTTSSVAHSSGYISPNHLPAAAPSFLNCSSTGGSGSAGVANSSSIINNGTTTTTTTSSSSSSSSAVISNNNNNTSSSNNNHHHNGKSLLESASSHIPYWAAFPGMTKPSHHIYGDSKSLPEAPHLVHHQPQHPVLSSTYENLTESSPLTKKKHSSHLHSNAILRSVLADSSQPMGIDHQQSELGLELAYSNATSSNGLLRDADRRNSAEMSEDERRNNTSPRNSYHAPGSNGHRSGNGGGSSSTRPEWKRYKQYTRENIMDAMTAVREKKMSALQAARQYKVPSRTLYDKLKKAGILPSRSSAPRGTSSAQTVASGIESSACFPYPSGVNGSIYGNRPSAICSDAMSEHDVDMNGYSSDNGYGRDNDLTGSSSVGGDNESHDEVMDMSRRTPSPPPTALLMAQQHQQQLVATADLSMEDEVEDLSVNRTPRLEAGGLNDVSVIVPTVKNLGLKKEEEPGDEDTLARV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368913; iTF_00368051; iTF_00368194;
- 90% Identity
- iTF_00368913;
- 80% Identity
- iTF_00368913;