Care015679.1
Basic Information
- Insect
- Copidosoma aretas
- Gene Symbol
- bab2
- Assembly
- GCA_030522625.1
- Location
- JAPYYV010017355.1:767-2854[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-09 3.6e-06 27.6 0.1 1 38 404 442 404 446 0.93
Sequence Information
- Coding Sequence
- ATGGGCGAGGTAATACCGCAGCACTACTGCCTGCGCTGGAACAACCACAAGTCGAACTTTGTTCTGGCGTTCGAGCAGCTCTTCAACCTCGAGGCCTTCACAGACGTCACGGTGGCCGGCTACGACGGCCCGGCCATAAAGTGCCACAAGATGGTCCTCGCCGCGTGCTCCGTCTACTTCCAGGAGCTCTTCATGAAGAACCCCTGCGAGCACCCCATCATTATACTCAGTAACGTGAAGTACATCGAGCTCAGGTCGATCCTCAACTACATGTACAAGGGCGAGGTAAATGTCGAGCGCAACGACCTCGACGAGCTCCTCAAAGTCGCTACCTTCCTCAAGGTAAAAGGTCTGGTGGGGGAGTCGCAGGTCAAGTGCGAGGAGCCCGACAACTCGATCTCGCCGTCCCCAACGATCGGCAACAGCACGACCAGCAGCGCGGCCCACAGCAGCGGCTACATTTCGCCCAATCACCTGGCAGTGGCCCCGAGTTTCCTCAACTGCGGTGGCACCGTTGCCGCCGCCAACAGTAGCAGcattatcaacaacaacaacagcaacaacaacaacaacaacaatacaaccaccaccaccaccaacagtagcagcaccagcagcaccgTCACAGGCACCGTCACCGGCACCGGCATCGCCAGCAACGGCAAGTCTCTCCTCGAGAGCGCCCCGAGCCACATACCCTACTGGGCTGCCTTCCCCGGCATGACCAAGCCTAGCCACCACATATACGGGGACAGCAAGTCCCTGCCCGAGGCGCCGCACCTCGTTCACCAACAACCCCAGCACCCGGTGCTCAGCAGTACCTACGAGAACCTAACCGAGAGCTCGCCGCTCACCAAGAAGAAGCACTCGAGCCATCTGCACTCGAACGCCATACTCCGCAGCGTTCTGGCCGACAGTTCGCAGCCGATGAGcgtcgagcagcagcagcaccaccaccaccaccaccatcaccagcAGCAGTCCGAGCTCGGGCAGGAGCTCGCCTACAGCAACGCGACCAGCAGTAACGGTCTACTGCGCGAAGCCGACAGGCGCAACAGCGCCGAGATGTCCGAGGACGAGAGGCGGAACAACACCTCGCCCAGGACCAGCGGCTACCACCACCACGCGCCCGGCAACAACGGCCACAGATCAGGCGGAGGCGGCTCGTCGTCCACGAGGCCCGAGTGGAAGCGCTACAAGCAGTACACGCGGGAGAACATAATGGACGCGATGACCGCGGTGAGGGAGAAGAAGATGAGCGCCCTCCAGGCGGCGAGGCAGTACAAGGTGCCCTCGCGCACGCTCTACGACAAGCTCAAGAAGGCCGGTATCCTGCCGTCGCGCAGCAGCGCCCCACGGGGTGCCTCAGCGCAGGCCGTGGCCAGCGGCATCGAGAGCAGCGCCTGCTTTCCTTATCCGTCGGGGGTCAACGGCAGCGTGTACGCCAGCAGGCCGAGCGCCATGTGCAGCGACGCCGCGTCCGAGCACGACAACGACATGAACGGCTACAGCAGCGACAACGGCTACGGCCGGGACAACGATCTCACGGGCAGCAGCGTGGGCGGCGACAACGAGTCCCACGACGAGGTCATGGACATGTCCAGGCGCACCCCAAGCCCGCCCCCGAGCACACTGCTGCTGgcccaacagcagcagcagcagttgggCGCCGCCGCGGATATGAGCATGGAGGACGAGGTCGAGGATCTGTCGGTCAATCGGCGCACGCCCAGGCTAGAGATCGGCCCCGGTAACACGAACGACGTCAGCGTCATCGTGCCGACCGTCAAAAATCTGCTGGGGATCAAGAAGGAGGAGGACCCGGGCGACGAGGACACCCTGGGTCGTGTCTGA
- Protein Sequence
- MGEVIPQHYCLRWNNHKSNFVLAFEQLFNLEAFTDVTVAGYDGPAIKCHKMVLAACSVYFQELFMKNPCEHPIIILSNVKYIELRSILNYMYKGEVNVERNDLDELLKVATFLKVKGLVGESQVKCEEPDNSISPSPTIGNSTTSSAAHSSGYISPNHLAVAPSFLNCGGTVAAANSSSIINNNNSNNNNNNNTTTTTTNSSSTSSTVTGTVTGTGIASNGKSLLESAPSHIPYWAAFPGMTKPSHHIYGDSKSLPEAPHLVHQQPQHPVLSSTYENLTESSPLTKKKHSSHLHSNAILRSVLADSSQPMSVEQQQHHHHHHHHQQQSELGQELAYSNATSSNGLLREADRRNSAEMSEDERRNNTSPRTSGYHHHAPGNNGHRSGGGGSSSTRPEWKRYKQYTRENIMDAMTAVREKKMSALQAARQYKVPSRTLYDKLKKAGILPSRSSAPRGASAQAVASGIESSACFPYPSGVNGSVYASRPSAMCSDAASEHDNDMNGYSSDNGYGRDNDLTGSSVGGDNESHDEVMDMSRRTPSPPPSTLLLAQQQQQQLGAAADMSMEDEVEDLSVNRRTPRLEIGPGNTNDVSVIVPTVKNLLGIKKEEDPGDEDTLGRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368725;
- 90% Identity
- iTF_00368194;
- 80% Identity
- iTF_00368194;