Care014721.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Copidosoma aretas
Gene Symbol
Hr39
Assembly
GCA_030522625.1
Location
JAPYYV010015665.1:15551-20272[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 3 3.9e+04 -15.8 27.4 51 162 51 196 20 232 0.41
2 4 2.9 3.7e+04 -5.2 11.1 37 160 347 459 312 485 0.45
3 4 5.2e-08 0.00068 20.3 0.0 1 21 643 663 643 674 0.91
4 4 9e-62 1.2e-57 197.3 0.6 82 408 695 1015 677 1015 0.80

Sequence Information

Coding Sequence
ATGTCAGATCAGAGCGGGCCCGGGGCCTCTGAGCCAACGGCAGCTCCTGCCTGGTGGCAACCTGCCGCCGCCACCAGTCAGCCCTGGAAATCCACGGCGAGCGGCGGCAACAATCACCACAACAGCAGCCATCATCACCACAATCATCACCACCACAATCACGGCCATCAACACCACAACCACCACAACCATCAGCATAATAACCATCACAGTCATCACAATCATCACGCCTCGAGCGGTGGTAGTAGTGTGGTGCGCACGCCCGAGCACGGGAAAAATGTATCCGTCACGACGATCAACGTACCACCGCCGTCCATTCACGAGATGCACGACGGTAAAAGCGTCTGCAAGTATTTGGGCGGCCAGAATGGCGTAACGGTCTCTGTCGTCTCGAGCTGCGGCCCAAGCAACAGTACCAGTTCCAACACCATCACTGCCAACAATAACAATAGCACAAACAGCAACTCCACCACCACCTCCAACAACAATAACCAcagcaacaataacaacaacagcagcagcagtgtcAACACGAGCAACGGTTCTGCGTCAACGGCCTCGTCGTCCATCAGTTCGAGCAGCAATAACCATCCAACGACCATCTGCACGTCGACCTCGTCGACAACATTGCCGGTAACGCCTTTAGCGCTAGCGGACGAGTCCTGCTCGCTGAAAAACGACGATGACCACGATGACGACGCGGACAGCGATGGCGAGGTCAGTCGGATCGACTTTCGGGGCGTGAACTTGCGGACAAAGAAAAAGCGCGACGCCACCAATGCCCACGATGCCGAGCACGACCAGCCCGAGCGCCCGATGTCCTGGGAGGGCGAGCTCTCCGACCAGGAGATGTCCTCCAACACGATCACCAATGATCACGAGGAGACGTCAATGGAGGGCGTCCAGGTCTGCAGCGGCAGTCCGGGCCCGTTGCACGAGCAGAAGTTCCCGATCAAACCGGAGCCGGATTTCCGATCGAGTCCTGGACTCCAGAACCTGGCCGGCCAACCCGGCAGCCTCAACGAGACAATAGTTGCTGTGCCTCATGTTCAACAGCAGATTcatcagcaacagcagcagcagcagcaacaacaggtTCAGCATGAGCAGGTGGCACAGCAGAGCGATTTGCCACTGCTGGTCGACAAGCTGCTCGGCGGATGCAACAACTCGACTCCGAGCCACAGTCCGGTTCTCATTCCCCGGCACCATCTCACCAAGCACAGCCACACCAGATCTCAGGTACCGTCGCCAGATTCAGCAATCCACTCTGCCTACAGTGTATTCAGCTCGCCGACGCAGTCGCCGCACGCCGGCCGGCATTCGGCCTTGGGTCCAGGCTCGCCGGTGCCATCGTCCTCGCTCTCGTTATCCAGGCACAGCTTCAACAACTCGAGCTCGTCCCTCTCGCTCTCCCTGTCGCACTCGCTCTCGCGCAACAACTCGGATGCCTCGAGCAGCTGCTACAGCTACGGCAGCCTCAGTCCGCCCACGCACTCGCCGGTCCAGCAGCGTCACGCTCATCATTTACAACAGCAGGCGGCGGCCGGGGCGGCAGCCTTGCATCTGCAATCCAGTGGGGTGCATCATTACGGAGCCGCTGCTGTGGCTGGCTTGTCCACCGATGCCGGGGACGCGCATCTGGATGACCAGGATGACTGCAGGATACCCTCGGCGCCCTCGGGCATCTCCACGAGGCAGCAGCTGATCAACAGCCCGTGCCCGATTTGCGGGGACAAGATTAGCGGTTTTCATTACGGCATTTTCTCGTGCGAGTCGTGCAAGGGTTTCTTCAAACGCACGGTGCAGAACCGCAAGAATTACGTGTGCCTTAGGGGCGCTGGCTGTCCGGTAACGGTAGCCACGCGCAAAAAGTGTCCAGCCTGCCGCTTCGACAAGTGCCTCAACATGGGCATGAAACTCGAGGCAATACGCGAAGATCGGACGCGCGGCGGTCGCAGCACTTACCAGTGTACCTACACGCTGCCGGCGAATCTGATGGGTTCTGGCTCGGTGGCCGCGGGTGGCCACGGCTCAGACAGACTAGCCCAGACTGGATCCTGCAGTCCAGCGGCTGGTGGAGCCGATCATCACCATTCCATGAAGCACCATTCGCACAAGGTGCAGCTGGTGCCACAGCTCCTGCAGGACATTATGGACGTCGAGCATCTCTGGCATTACAATGACAACGACAGACTCGGCGCCAGTCAGGCTATGGGTTCGCTCAATCTTGCTCAGTCTCTACCCAACATGGCTAGCACCGACTCGCTGAGCGCATCCAATGGTATCAatagcaacagcagcaacacgAACGGAGGTGGCGGCAGTAGCAGTAACAGTAGCAGTCGGAGCGAACTTGCACGACCGTCATCCTCGAACTCGTCAACGCCTACGCCGATCCacgaacagcagcagcagcaacaatctTCCGGTAACCATCAGCAATCGACTTCGATAGACAGCGGCAATCCAACCCAGCATCCAGACTTCCTCTCGAATTTGTGCAACATAGCTGATCACCGGCTCTACAAGATCGTTAAGTGGTGCAAGAGCCTGCCGTTGTTCAAAAACATCTCGATCGACGACCAAATTTGTCTGCTCATCAATTCTTGGTGCGAGCTGTTGCTGTTCTCCTGCTGTTTCCGCAGTATGAGCACACCAGGCGAGATCCGAGTCTCGCTGGGCAAATCCATAACGCTCGAGCAGGCCAGGGAGCTCGGGTTGGCTGCGTGCATCGAAAGAATGCTTGCCTTCACGAACAATCTCAGGCGGCTCTGGAAGGTAATCGTTTTGTTAACGTCGGATACGAGCGAGTTAAAGGAGCCAGAGAAGGTGCGCTCTTCACAGGAGAAGGCGCTGCAAGCACTGCAGCAGTACACGATAGCGAGGTATCCGGAGATGCCGGCCAAGTTCGGCGAGCTGCTACTTCGAATACCGGACCTACAGCGTACCTGCCAAGCAGGCAAAGAACTGCTCAGTGCGAAACGTGCCGAGGGCGAGGGTTGCTCCTTTAATTTGCTCATGGAACTACTTAGAGGGGACCactga
Protein Sequence
MSDQSGPGASEPTAAPAWWQPAAATSQPWKSTASGGNNHHNSSHHHHNHHHHNHGHQHHNHHNHQHNNHHSHHNHHASSGGSSVVRTPEHGKNVSVTTINVPPPSIHEMHDGKSVCKYLGGQNGVTVSVVSSCGPSNSTSSNTITANNNNSTNSNSTTTSNNNNHSNNNNNSSSSVNTSNGSASTASSSISSSSNNHPTTICTSTSSTTLPVTPLALADESCSLKNDDDHDDDADSDGEVSRIDFRGVNLRTKKKRDATNAHDAEHDQPERPMSWEGELSDQEMSSNTITNDHEETSMEGVQVCSGSPGPLHEQKFPIKPEPDFRSSPGLQNLAGQPGSLNETIVAVPHVQQQIHQQQQQQQQQQVQHEQVAQQSDLPLLVDKLLGGCNNSTPSHSPVLIPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAGRHSALGPGSPVPSSSLSLSRHSFNNSSSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQRHAHHLQQQAAAGAAALHLQSSGVHHYGAAAVAGLSTDAGDAHLDDQDDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLMGSGSVAAGGHGSDRLAQTGSCSPAAGGADHHHSMKHHSHKVQLVPQLLQDIMDVEHLWHYNDNDRLGASQAMGSLNLAQSLPNMASTDSLSASNGINSNSSNTNGGGGSSSNSSSRSELARPSSSNSSTPTPIHEQQQQQQSSGNHQQSTSIDSGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARELGLAACIERMLAFTNNLRRLWKVIVLLTSDTSELKEPEKVRSSQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGCSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00368164; iTF_00368822; iTF_00368828; iTF_00368863;
90% Identity
iTF_00368164;
80% Identity
iTF_00368164;