Cnas009027.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:1187959-1191136[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0035 6 6.7 0.1 21 45 205 229 201 235 0.88 2 4 0.00056 0.98 9.2 0.2 21 44 261 284 243 288 0.85 3 4 0.00046 0.8 9.5 0.0 21 45 289 313 284 316 0.88 4 4 0.017 29 4.5 0.2 16 48 317 349 313 351 0.86
Sequence Information
- Coding Sequence
- ATGGATGTgatcaaatgttttatttgtaatatGAATTTTGTGCCGATTGATAATTATCTTGGATTGCATGTTGACGGTGCAATGACGGCGATGCCATTGAAGGAGGTCCTTGAAAAATCCTTACATATTGTAGCtgatgttgaaaatgaatatttttgcatgaaaTGTATTCAGAAAATAGAAGAATACGACGAATTGGTCCAACAAATTCGACGCATTGAAACCGATTTGTATGAACTATTCCAAACGAAGTCAGAGGCCTTTGTCTTGAACATGAAGTGTGAATTTGAGGATCCGGATATTATAGAGAATCAGGatgaaacgaatgaagaaTTTATTAAAGACCAAACTGTAAGTGGTGATCAAAgtattgatgatgatgatgaagaagaaagtAAACATAATATAGTTGAATTCGAAACGACCTTGCTACAATTagatgataataaaaaatcgaaagttcGTAAATGCaggaaaaatgtgaagaacACATCGAAAGATCCAAAATTAGTCAAAAAGAAGCACTACAAAATCGAACAAGTTTCTTGTGATGTTTGCGGCCGTATCTACCAATCAAAAGGCGCACTTGGCGTTCACTTAGTAAAACACTCCACCAACAATCCACACGaATGTAAAATCTGTCATAAAACTTTTACACAAAGGATTGGCCTTAAAAGGCACATGCCAATTCATACGGGCGAGCAAAATCACCAGTGCGACGTGTGTGGAAAACGTTTCACACATGCAGCTTCATTTaacatgcacaaaaaaattcatattgatGAAAGACCGAAAAAATGTAACTTATGTGGTGCAGAGTTTCGTTCGTCGTCTCATATTAAGAGGCATATGCGGTCACATACGggtgaaaaaccattttcatgtACTATCTGCGGGCAGAAGTTTACACAAGGGTACAATTTGAAAACCCATTTAAAGACGCATGAAAAGTCACAGTCAAAGTCAACGAGGATGTTCATCTGTGTCGTTTGCTCACAAGTATTCACTCGGCGGgaaaaattaaacgaacaTTTAGCGAATGCTCACCAAATAGTCGACACACCCTCCAACGGTTTTGAGAATTtagcataa
- Protein Sequence
- MDVIKCFICNMNFVPIDNYLGLHVDGAMTAMPLKEVLEKSLHIVADVENEYFCMKCIQKIEEYDELVQQIRRIETDLYELFQTKSEAFVLNMKCEFEDPDIIENQDETNEEFIKDQTVSGDQSIDDDDEEESKHNIVEFETTLLQLDDNKKSKVRKCRKNVKNTSKDPKLVKKKHYKIEQVSCDVCGRIYQSKGALGVHLVKHSTNNPHECKICHKTFTQRIGLKRHMPIHTGEQNHQCDVCGKRFTHAASFNMHKKIHIDERPKKCNLCGAEFRSSSHIKRHMRSHTGEKPFSCTICGQKFTQGYNLKTHLKTHEKSQSKSTRMFICVVCSQVFTRREKLNEHLANAHQIVDTPSNGFENLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00367531;
- 90% Identity
- iTF_00367531;
- 80% Identity
- iTF_00367531;