Cnas006402.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:4153838-4156829[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.7e-05 0.046 13.5 0.2 19 47 152 181 142 186 0.73 2 5 0.0031 5.4 6.9 0.1 21 45 183 207 179 212 0.90 3 5 0.013 23 4.9 0.0 15 47 258 290 243 295 0.78 4 5 0.18 3.1e+02 1.2 0.0 22 44 293 315 290 321 0.87 5 5 0.0027 4.6 7.1 0.2 26 48 358 380 348 385 0.89
Sequence Information
- Coding Sequence
- atgacctcaataacaaataaaactgCACACAGTGCTGTTTCCGCTTCGTTGAAATCGGCCGACATGTCAGTGATAAAAAATCGTTCCAGTATGAATGAGTCAGATTTGCAGGCTGAATTGATTGAAGTAATACCGGAGCTACCGTTTAACGATAGCGAAGACGATTTTAGTGAATACAGTGATGATATCGAGCAACATAGCCATTCATTTCATctaaacgatgaaaatgacgatgatgaagaaCCATTCGATGAATATGCCTATCAAGTGATGTCGAATCATAGTGAACCACAAACAATTTGGTTTGACAATTCCCAATTAAAATCGTTACCGATGAATGGCAATTCAACGGGTGACAGTGATGATGTGATATTAATCGATGACGATGACAGTGATggtgattttaatgaaaatagcAACGGAGGCCTTACACACGAACCTTCTGGAAATTCTTCTTCTGCCGAACAAAAAGTTTATTCATGTGATATATGCAAAGCACGATTGTCCAGTAGCTATAATCTAAAACGCCATATGATGATTCATTCTGGTGAAAAACCTTTCGAATGTGACATTTGCAAACGACGCTTTCGAGAACAAAGTGATttaagaaaacataaaaaagtcCACAACAATATTTCGgcaaatgtaaaatgttcGGTGTGCAATCGTAATCAACCATCGAGCCGTAATTCGACAAAATGTGTTTCGTGTGAAAAACAACAGGAAACAACAAAACGGTACAATCACAATTCAGTATCAGATAACCTTGTGCCACGCATTGAtgccaataataaaaaagcatTCGTGTGCAAATATTGTGATAGAGCCTTTGGCAGCAGCTCAAATCTAAAGAGACACGTTATgatACATACTGGTGAGAAACCATTTTCGTGTTCCGAATGTAAGAGGCCATTCAGAGAAATGAGCACgttgaaaaaacatttgataacACATCGCAAACAGAATGGATTTAATTCAAACACCGTTTTAAAAACGATGAGTTTTACCGAACCGAAGCAATTGCCAATGGCAAAACCATTGAAACTTACACAATTTCCACACAGTTTACACAAATGTCCACTGTGCAAGACAATTTGTCGTGGCACCGAAAATCTCATGAACCACATTACCACAATTCATCGGCCAAATAttggaaaaaccaaaaacaatggATCTTCCGACAATACGATGCGAAAACATTCCAAATCACCGCCACCACTCATTCCAATCAACAAAGCCGCCTTCAACTGTTTGAATGCCAAAAGAATTTAA
- Protein Sequence
- MTSITNKTAHSAVSASLKSADMSVIKNRSSMNESDLQAELIEVIPELPFNDSEDDFSEYSDDIEQHSHSFHLNDENDDDEEPFDEYAYQVMSNHSEPQTIWFDNSQLKSLPMNGNSTGDSDDVILIDDDDSDGDFNENSNGGLTHEPSGNSSSAEQKVYSCDICKARLSSSYNLKRHMMIHSGEKPFECDICKRRFREQSDLRKHKKVHNNISANVKCSVCNRNQPSSRNSTKCVSCEKQQETTKRYNHNSVSDNLVPRIDANNKKAFVCKYCDRAFGSSSNLKRHVMIHTGEKPFSCSECKRPFREMSTLKKHLITHRKQNGFNSNTVLKTMSFTEPKQLPMAKPLKLTQFPHSLHKCPLCKTICRGTENLMNHITTIHRPNIGKTKNNGSSDNTMRKHSKSPPPLIPINKAAFNCLNAKRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00367565;
- 90% Identity
- iTF_00367565;
- 80% Identity
- iTF_00367565;