Basic Information

Insect: Contarinia nasturtii
Gene Symbol: Trerf1
Assembly: GCA_009176525.2
Location: NW:1076828-1104440[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 8.1e-05 0.003 17.6 0.2 2 23 166 187 165 187 0.97

2 7 1.6e-06 5.8e-05 23.0 1.3 1 23 193 215 193 215 0.99

3 7 0.00012 0.0045 17.0 2.6 1 23 221 245 221 246 0.95

4 7 0.00066 0.024 14.7 0.8 2 23 399 420 398 420 0.97

5 7 7.6 2.8e+02 1.9 0.6 5 23 1261 1280 1259 1280 0.93

6 7 0.0049 0.18 12.0 0.7 1 23 1305 1329 1305 1329 0.95

7 7 0.0002 0.0073 16.4 0.8 1 23 1365 1387 1365 1387 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	8.1e-05	0.003	17.6	0.2	2	23	166	187	165	187	0.97
2	7	1.6e-06	5.8e-05	23.0	1.3	1	23	193	215	193	215	0.99
3	7	0.00012	0.0045	17.0	2.6	1	23	221	245	221	246	0.95
4	7	0.00066	0.024	14.7	0.8	2	23	399	420	398	420	0.97
5	7	7.6	2.8e+02	1.9	0.6	5	23	1261	1280	1259	1280	0.93
6	7	0.0049	0.18	12.0	0.7	1	23	1305	1329	1305	1329	0.95
7	7	0.0002	0.0073	16.4	0.8	1	23	1365	1387	1365	1387	0.98

Sequence Information

Coding Sequence: ATGGCTGCTGTAAATTCGGTTCAAGGAGGTTTGCGACTTCCTTTGGCCGGTATCGCATCACCAAGACTGTTGATGTGTAGCGCATCAATGGGTGCAGAAGGTTCGGTAACACTTCAGTTACGTGAGGCAGTTGAGGCTCCCGATTCAAGTGGACAGTCTGATACGACCGCATTGACGATTGGCTATCCAGAGACAGATCTTTTGGCTGACATACAAGGATCAATACAGGCTACAGTCGGTAGTGTAGTCAGTAAAAACTCGGTGCAAAGCAATGGCACCGTTACCGTTACAACTGTGCCAGTCACAACGACCAACGGCAACAGCAACATCAATGTGAATCGCAACCAATCATCGAATACAAACGTTAAGGAAAATGTGGTAACCACCgctcaaaataaaacaacaacaatcgcaTCATCAGCAGTAGCGGTGACAGTGGCAACGGTAAAAAAGTCCAGGCCGAAAACATCATCACCAACACGACACGGACCTCAACAATGCCAAGTATGCAGCAAAGTGTTCGGTAATGCGTCTGCTTTGGCAAAACATAAGCTTACTCATAGCGATGAACGAAAGTATGTGTGTGGCATGTGTTCAAAAGCATTTAAACGACAAGACCATTTaaaTGGTCATATGCTGACTCATCGTAATAAAAAGCCGTACGAATGTAAGGCAGAAGGTTGTGGTAAATCCTATTGCGATGCACGATCGTTAAGACGACACACTGAAAATCATCACAATACGGTGGCAACGGCTCCAACTACGccaaatcaatcgatttcatCAACAGGACCTCTGGGTGGCTTGAGTTTGTCGCCAGCAACCGCAAGCGGTGATGCAAGCTCTCCGCATGGTTCtaattgtttgcaatttaatGGTAATGGAGTAGGAGGAGATGGATCGAAATCACCGAGCTTACCAGCTGCTACTAGTAATGAAGGGCTGTCACGTCAACAGCTTGAGCTCATTAGTCAGATTatgcaacaaacaaaaccaaacgTGAGTCTCACTTCAGCCAACCAacaaaatggtcaaaaatcCATTCCGCGCCCAAGAACCTGGAACattcagACTCAACTGCAACAAACCCAAACGAAATCTGAAGTTGAAACGATAAACACAACATCAAACGCAACTACAACACTACAATCAACGGCCAATGGGAATACGGTGAAGACGGAACAAAAACCCGTTGAATGCAATTTATGCCATCGAAAGTTTAAAAATATACCAGCTCTTAATGGTCATATGCGTTTGCATGGTGGATATTTCAAGAAAGATGCCGAAgcgaaaaaatgtgataaaaaagaGACACCTGGGCCACCGTTGCAAACAGCAAGCGTTGGCATTCGGGCTCTCATCGAGGAAAAAATCATAAGCAAGCGAGGAAAAGACATACTCAAAaatTCATTTGCAGTACCTGCACCGCCAACATTATCACGTCGTTTAATCGATGCGGATAATTTTGTGGCACCAAAAACATTGACTACAACGAACGTTGTGACGCCGAGCCAAATATCAAATGCCATCACGTCGATTCCAGTGTGCCAAACAACAACCATGACAAATGTGACCCCAACGACAATTGCCAAGAATATTCAGTTGAGCacgaatttaaataaacagaATTCTATTGAAACAAAAGATGCAACACTCATTGAATTACTAAAACGCGGTACAAAAGTGGCGGTCAAATGTAATTCAAATGATACGAATGGTAGTACGCtgacatttaaatcaaatgcaacacaacagacaacaacaacaggagcagcaacaacaacggtTCTATTGCCAACAAATGTGACCGTATCCAGTCCGGTTACGCCAACTACAAGTCCATTGGGCATATCATTGTCAAATAATTCCGTGAAAAACACTCCACTTGCACTAACCATttcacaaaatgcaaatggaTCAAGCGACGTGTACACGTTAGCCTATTCAACTGATGCGACATCGACAttcttcaatgaaaatgatgtgtaTAATGTACCAGATACAGCGATGCTTTTGCAAGCAGTCGATTCCATTCAACTCTTACAAAATTCCAGTGGTTCGTCGCAGCTTGGTGACATTTCAACTATTGGCGAATATGCATTGGCCGATGGCGGTGATCTGAACGATACAAATATTCTATCACAATATACACCATCGCGACAAATTCAGGCTGTGCTAAATTCACCGTTACCGGAAAGTTTGGCCGAATTTAGCACACTTCATTCCAAAGATTTTGTGCTCTATGGCACCgaaagtgaaaatgatgattcaCCAACGGCACACACATCGAATTCATCGTTGCCCACATCACCGCTATCTTATCCAACACCGCCAGCCAGCCATGAAGGAATTACACAATCGTCACCGTTCCTTGATGATACTCATCATTTTGGCGATGCCAATTCTATATTTGAtgataagaaaaatattagcTTCCTCGATGAAAATGGATTATTCAAAGACATTAAAGACACACGACTCAGCGATTGtgagcaaattttaaaattaaaacatgaGCTTTTCAACGACACCAAAGTTGTGATGGACGATACATTGTATTTTAAgagtgaaattaaaaatgaatataattccAAGAGCGATTTAGCCAATGCAAATAATCACACCGAAAATATCGACGAGTTTAATCAAAACCTATCGTTTCTTGATGAATCACGAAATTTCCTTGTCGACAGCCGCAATCCATCGTCACCATTGTCGGCTGCATTTTTTACCAGCACCATGTCAAGCGCTGAAGAAGTAAAAGAAGCACTCCAAGAAGTGTTGCCTAACGAAAGTATTGCATGTGAACAGAATAACGACATTGATTTGTATTACTTACCATCGGCCGCATTTCAGTCACAAATGATGCTCAACTCTGACGATCCATTGTTATCATCATCGCCAAAGGATTTTATCATTAAACATCCCATAAATCGGTTCGAATTCGAATCGGGATCCAGtgcaaaaaagcaaaaacttGATGGTGGCGGTTGTGTtaatatagaaaaaagtaaaatactCATTACAAATCAAACGGAAAAAATGCACACCGAGACCTTTTTGAGCCCGTCCAATTTACCGATAAATGCACCAACAACCGTTGCAAATTCAACCACTAACAGCACTACAACTGAATTCACACAGCCCGCACATCAAgttaaagaaaatattcaatgctATGCAAAGAGTTCACAGATGAATGTTCGACGAAATATCGCatataaatcgattttacGAAAAGCATCGGCTCCATACTATACACCATCACCCATTCTTGATCCAAAACGAATTGCGCCCGGTTTGTATGCAGAAGTATCGAAGGATACATCCGAAGAtatgattgattttgaatttgccGAAAGTGCATGTGTTCCGGAGTTTACCAGAAAGTTTAAAGTAAACATTGGTTCGGATTTTCAAGCCATAATTCCATCAACGGAAACAGCAAAATCAGCTTATGAAAACGACAAATCGGAGAGAGAGCTGCCGTTGTGGAAGCCAAATGTGTTACAAAACGAAAAGCAAATTCAGCGTTTCGTTGAATTGGCCAAATCGAGTGCAGTTCCATTAGCGTGTCATTCGGAAGAGATGGCATTAAAAGCGTTGCTCAATGCAAACGGTGATATTccaaatgcaattttgaaaatgttacatGAACCACCATCGTCTATTCATAATCGTTGGCAACCGCAAGAAGTTGAAACTTTTCTTAATGGCCTTGAAACGCACGGAAAGAACTTTTACAAAATTTCCAAAGAGATTCCATCGAAAACGACTGGCGACTGTGTACAATTTTACTACTTTTGGAAAAAGCTTTGCGTTCATTATAAAAGCACTCACTTGAGTTCCGAACTATTCAATTCGGCGGATGGAAATTCGATAAATGCCACAAATCAACAAGAAGCTCGTCCGCATGTTTGTGAAATGCCAGATTGTTCAGCAaGCTTCACATCGAAAGCAGCGCTGCACGGTCACACACGAATTCATTGCATTGGACGGGGAAACACATTTCCATCTAGCACGGTCAACGGACAAAGTTTGTCAGGTACTTCAATTGCTTTAATCACACAGGAAGATATACCCTGCAAAGTGTTTCCCTGTAAGGTTTGCGGAAAgGTATTTAATAAAGTAAAGAGCCGTAGCGCACACATGAAATCACATCGAGCACAAGAGATGGAAGCGAGCACCAATTGA
Protein Sequence: MAAVNSVQGGLRLPLAGIASPRLLMCSASMGAEGSVTLQLREAVEAPDSSGQSDTTALTIGYPETDLLADIQGSIQATVGSVVSKNSVQSNGTVTVTTVPVTTTNGNSNINVNRNQSSNTNVKENVVTTAQNKTTTIASSAVAVTVATVKKSRPKTSSPTRHGPQQCQVCSKVFGNASALAKHKLTHSDERKYVCGMCSKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHNTVATAPTTPNQSISSTGPLGGLSLSPATASGDASSPHGSNCLQFNGNGVGGDGSKSPSLPAATSNEGLSRQQLELISQIMQQTKPNVSLTSANQQNGQKSIPRPRTWNIQTQLQQTQTKSEVETINTTSNATTTLQSTANGNTVKTEQKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAEAKKCDKKETPGPPLQTASVGIRALIEEKIISKRGKDILKNSFAVPAPPTLSRRLIDADNFVAPKTLTTTNVVTPSQISNAITSIPVCQTTTMTNVTPTTIAKNIQLSTNLNKQNSIETKDATLIELLKRGTKVAVKCNSNDTNGSTLTFKSNATQQTTTTGAATTTVLLPTNVTVSSPVTPTTSPLGISLSNNSVKNTPLALTISQNANGSSDVYTLAYSTDATSTFFNENDVYNVPDTAMLLQAVDSIQLLQNSSGSSQLGDISTIGEYALADGGDLNDTNILSQYTPSRQIQAVLNSPLPESLAEFSTLHSKDFVLYGTESENDDSPTAHTSNSSLPTSPLSYPTPPASHEGITQSSPFLDDTHHFGDANSIFDDKKNISFLDENGLFKDIKDTRLSDCEQILKLKHELFNDTKVVMDDTLYFKSEIKNEYNSKSDLANANNHTENIDEFNQNLSFLDESRNFLVDSRNPSSPLSAAFFTSTMSSAEEVKEALQEVLPNESIACEQNNDIDLYYLPSAAFQSQMMLNSDDPLLSSSPKDFIIKHPINRFEFESGSSAKKQKLDGGGCVNIEKSKILITNQTEKMHTETFLSPSNLPINAPTTVANSTTNSTTTEFTQPAHQVKENIQCYAKSSQMNVRRNIAYKSILRKASAPYYTPSPILDPKRIAPGLYAEVSKDTSEDMIDFEFAESACVPEFTRKFKVNIGSDFQAIIPSTETAKSAYENDKSERELPLWKPNVLQNEKQIQRFVELAKSSAVPLACHSEEMALKALLNANGDIPNAILKMLHEPPSSIHNRWQPQEVETFLNGLETHGKNFYKISKEIPSKTTGDCVQFYYFWKKLCVHYKSTHLSSELFNSADGNSINATNQQEARPHVCEMPDCSASFTSKAALHGHTRIHCIGRGNTFPSSTVNGQSLSGTSIALITQEDIPCKVFPCKVCGKVFNKVKSRSAHMKSHRAQEMEASTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01351156;
90% Identity: iTF_00367164;
80% Identity: iTF_00367164;