Cnas008071.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- hang
- Assembly
- GCA_009176525.2
- Location
- NW:6810766-6824390[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0037 0.14 12.4 2.1 2 23 231 253 231 253 0.95 2 24 0.73 27 5.1 3.6 2 22 334 354 333 354 0.93 3 24 0.48 18 5.7 0.8 3 21 364 382 363 383 0.95 4 24 0.1 3.7 7.8 0.7 3 20 424 441 422 445 0.89 5 24 1.2 44 4.5 0.3 2 22 486 506 485 508 0.87 6 24 0.00054 0.02 15.0 0.8 3 23 550 571 548 571 0.95 7 24 0.00062 0.023 14.8 0.2 1 23 579 602 579 602 0.98 8 24 0.0076 0.28 11.4 0.2 1 23 618 641 618 641 0.94 9 24 0.22 8.1 6.8 1.1 3 23 646 666 644 666 0.97 10 24 0.00044 0.017 15.2 1.0 1 23 672 695 672 695 0.96 11 24 4.1e-05 0.0015 18.5 2.1 2 23 782 804 781 804 0.96 12 24 0.03 1.1 9.5 3.1 2 23 831 853 830 853 0.96 13 24 0.019 0.71 10.1 0.5 2 23 862 884 861 884 0.95 14 24 6.5e-05 0.0024 17.9 1.8 1 23 923 946 923 946 0.96 15 24 0.0012 0.046 13.8 1.1 2 23 975 996 974 996 0.97 16 24 0.002 0.073 13.2 1.1 2 23 1005 1027 1004 1027 0.96 17 24 7e-05 0.0026 17.8 1.0 2 23 1035 1056 1034 1056 0.97 18 24 0.0057 0.21 11.8 5.4 1 23 1092 1114 1092 1114 0.98 19 24 0.0014 0.051 13.7 0.6 1 23 1162 1184 1162 1184 0.93 20 24 0.0091 0.34 11.1 0.1 2 23 1220 1242 1220 1242 0.91 21 24 0.12 4.6 7.6 0.3 2 23 1265 1286 1264 1286 0.93 22 24 1.7e-05 0.00063 19.7 0.4 3 23 1300 1320 1300 1320 0.99 23 24 0.00088 0.033 14.3 0.7 3 23 1429 1449 1428 1449 0.97 24 24 0.011 0.41 10.8 1.7 2 23 1563 1585 1562 1585 0.93
Sequence Information
- Coding Sequence
- atgaccGATGATTTACTAAAGAGAATAGCTCGTGGTGGCGGATGTCGATTGTGTCTTGCTCCCGATACGGAATGTGTTCCAATTTTTGCAACAGCTGCTGCCGACAAGGAGCCACttccaaataaaattctttcatGTGTCGGCATTAAGATACTGCCTGCGGATCGGATGTCAAATCGGGTGTGCCATGCGTGCATCAGTTTTCTAAATTCATGGCAAAGTTTCAAAAATCGCTGCTATGTCGcacagaaaaaacaacaaagtttTCTCGATTTGTTGTTGGCCAAAGAGCGTGCAAAGCAAAAGATAGAAAATGATCGACAACGTCAATTGCAGCAACAAGGCAAAACATCAGCCAGCGATGATCAACAAAGAATCCTGAAAAATGCACTACTCAATTCTACGATGCGAGCGAACGCTGTTGGCAACACATCGATTGATGTTAGTTTTATCAAAGAAGAACCGGAAGATATAACTAGCGACATCGATGAAATGGATCCAACACAATTTTTAGCTCAGGAAAATGATGACGAAATGGAAATCGAAGAACATCCACCAATTCTAGCATCACTCGGGCTTACCCACATCAGTCATCAGCAACAGAATACAGAAAATGCCAACAATGATCAAATGGATGAATCGTATAGTcagcaaaatgtaaataatttaatagcagGACGATCACAAGCCAGTTGTACCATTTGTCatatgcaattttcaaatcgaGCAAATGCCCGTCGACACGAACGAAACATTCACGGTATTCGAATATCGGTTCAAGGTGCACAAACCATTATTCAGCAAAAAGATAGGCCAGAGATCTCAATTACAACATCAACGGCAGCTGCACCAACCGCTGCACTTAAATTAAAGCGTCCGCTCGATGCGCCAATTATATATGATTACACCAAACCCGAATTGTATCGAACGTACTTGACCGAACCacgtttgaatttcattcgacgtcatttggaatttttggaaCAATATCAAACGATGACCTGTAAATGTTGTAACAAACAATTTCCCACATATAAATTTTTCATGGCACACATGCGCAAAAAGTATGATACACTGTCACGAAACTTGTGCTTTAAATGCTTGAAACAATTCCAAACGAAGCCACAATTCATTGCACATTTGAAGAAgcgaaattgtttgaatttgtatCGTGTATTCATGGCCGATGATACCATATCAAAAGAACCATTGCCAAATGCACCGATTCGACATGGTTCAAAGGAAATTATCGCAAATAAAACATATGGATGCCGTTTATGCACTGAAACATTCCGATTGAAATCGGATTTCCGTACGCATGTCGTCGACACGCATAGTGATGCACAAAAGAGCGAAGACGCTGGCAACAATGCTTGCGGCTATTGTAATTTGGAATTCGAAGATGGAAACGAACGACGTCGTCATTTCAGCAATGTTGAATGCATGGTATTTTTGATGTGTGGAACATGTGAAGagaaattcaattcacatcCAGAATATATTGAACACGTTTATGCAACGCACATACCATCGGCAAATGAGGCAGAAACaccaattaaaaatgaatttttgctcgACGATGAAAACGGTCTACTTCCCGAAGATCCAACACCGTCAACACAATCAAAAGCACGAAGTCCACAGAATTGTACTGTATGTGGAAAACAGTATAATAACTATTACAATGTACTGCGACACATGGAATCAAAACATCCCGATCAAGTGCCAACCACATATCGTTGCGATCGCTGCAAAATTGGTTATCCACGACAAGTTGAATTGCGTGAACATATGCTACGAGTGCATAATGAACGTCTTAAATTCGAtgccattaaaatgaaacgagaACAATTCAGTTGTCGTGAGTGCAAAGCGTCGTTTGAAAGCAAAGACTCTTGGCTGGCACATCAATTGGATGACCATTCGAAATTTTGGTGTAATCAATGCGACGAAGAATGCGATAAGAAGgaagaatttttgacacatcTTGCTTCACATTCAGAAGCCAAATCATTCAAGTGTCCGGTGTGTCAACATTCATTCAGTTCGGAACGTGGTTTCGAAACACATTTATCGGTCGTACATAATATGACCAAAGAAGAAGTGGCCGAAAGTAATTTAGATAATAGTGACTTTGGTGAACTGCCAGTTGAATGCGCTGTAGAAATTAACGGTGAAGATGATACAGACAACGATGACATTAACGATGCCGATGATTTGGACGGTAATGATGCCGATATCGATGAAACACTTGAAAAACCAGCCAAACGAATAAAACTGGATTTATCGGCAACCGATAATGAAATAACTACACCGCCAAACAACGAGACGTCGTTGAGTACGACATGCCGAATTTGTAAACAATCATTTACAACACGAATTCAATTGATGCAACACATGAGAAGTTCGCATAGTTCAGTATCAAAGCTACCATCGCTAACATCTTCACCTCATGTTGCCGTTCAAACGCATAATGTCAACAATCGTTTGCGGTGCCGAATTTGCCAAAAACGGATTCACACGAAGAACGGTTACAAGCGTCACATGCTTACTGTGCACAATGTAAAAGATTGTGTCTTTATAAAATGCACACTCTGTCCATCGGAATTCAGCAATGACAAAGGATTGAAAGTGCATATGTTCCGAACGCACAATATCACCGTTCAACAAATGCAGGCCGACGAAAGTTTGGTACCAATTCCAAAGCAAGAGTCAACATCACCGACACCATCACCAATTGTGCCAAGAAccgaatcaaaacaaatgttcGAATGCAACATTTGCCATACGGTTTACCGTAGCCGAGATCAATTGAAATCACACAGAAGCATTGTGCACAACATTACTGATGGagatttgaatgaaacggATCTTTTGGAATCGTTGGCCGAAGAAAATGCGTTCACAGGTGAATCGTGGTGGCAGTGTCGCTTCTGCAATGAATCATTTAATGCatcgaaaaaattaacaattcaCATGAACAGTCACAGTGAATATGATAACAAAGAAACCAAATGCAAAGATTGTGGAAATGTGTACGGTACACGTAAGTCACTTTGGGTTCATCGTCAAAAGAAGCATCCACGTCTACCAAATCCATCGCCATGTGAACTATGCGACAAGACATTCTTTGACAAAACGGAATTATTCTATCATttgaaaacacattcaaacgATGATGTATTCTCACACTTACAAGCAATGCAAGAACAACTCGAGGCCGAACAAGAGAGCCGCCAAAAACAGGAACAATCGAATGATGCACAAGAGAATTTTTCGTGCCATATTTGTAGCCAACGATTCCATGATAAACGTGTACTGAGCAAACACTTACGTGTACATGAACATCAGAAACAAACTGAAACGTCATTCAATAACTCAGCACTGGCAGCAATGCTGGCCGATACAAATATTAGTACCGAAGAAAATCTTGGCGAATACAGTTATCCATCGTATAAGGGTCAAATGGTTGAGAACGGTGAATTTGCATGTGATATGTGTCCGAAGAAATTTTCACATGTAAATGCATTAAAAGTTCATCGTGGTTGGCACTTCCGTTCGCCGGACGGACGACAAATTACCGATAGTAATAGCATTTGGCGACCAGATGTTGGcagcaataataaaaataaacgttcACGCGCAGCAAATCCACCCGTATGCCCGTTCTGTAATTCAACATTTGCAAGTGGCAATAATTTACGGCGTCACATTGTCGAAGTTCATAAACGAAACGAGGCGAAAATGATGCGTGAAAATGGAGTAGAAACAACATTCATcgaaaaagaatgtgaatgtgCTTCTTGTGGCATTACATTTAATACCAGACCTGAATGGGTAGAACATAAAATTTCGCATGCTCGAACGATGAAACCGAGCACCACTTATGAATGGGGATGTGAAATTTGTGGTAAAGTATTTACGCGCAAGGAACGGCTATTGGTTCACATGACATCGCATATGAATGGTGgcgaagaagaaataaatcaGCGCAAAGCTGAAATGGGCTTTGAAAGTAATTCACAAAGTTCGATGTCATCGTTgtcacaacaacaatcaaacgAAGCGACAAGCTTACGAAAAATATCCGgtgaaacaaaatcaagttCATCAGTATCGTTGCTGAAACAACCATCGCTACTGAAGCAATCGTTACAAGGAAAGACCACACCATCCATACAGAATGAAGTGAAACTACCACTAAAAACCGAGTCAGTTGAATCACTCGATTTAGATTACGAAAACTCGAATTCATATGAgcaagaagaagaacaaaataatTCGTGCGGCTTATGTGACCTGTTTTTCAAGAGTGCCAAGGAACTTAAGCAGCACGTTAAGAGTCACATTGAATCGATCGGCGGTCAACCGGAGGAGTCCAACTTAGACGAATATGATGAAGGAGATGACGAAGAGGAGGATGGACATGATGACGGCAATGGCAATTCGGACATTGAAGATCATTATGAAATTGATGAAGGTGTAGAAGGTGTAGAAGAAGAAATGGGCGAAGAAGAAGCCGACATGGTTGAAGAAGATTTTGAAGATGATGATGTTGACGAAGACGAACATGAAGAGCGAAAACCCGAAATAAGCGGTTTCAATTGTCGTTTGTGCGGCAGCAGCAGTGAATCACCACAGTCAATGATCAAATGTATGGATAATCATAATGTGAAAACCAGTATACAATGCGAACAATGTCAATTATATTTCACGAACAACAATCAATTAGAGAATCACGAGATGCTTTGCCATCCGCAAGAGGATTACGATGAAGATAGTGATTAA
- Protein Sequence
- MTDDLLKRIARGGGCRLCLAPDTECVPIFATAAADKEPLPNKILSCVGIKILPADRMSNRVCHACISFLNSWQSFKNRCYVAQKKQQSFLDLLLAKERAKQKIENDRQRQLQQQGKTSASDDQQRILKNALLNSTMRANAVGNTSIDVSFIKEEPEDITSDIDEMDPTQFLAQENDDEMEIEEHPPILASLGLTHISHQQQNTENANNDQMDESYSQQNVNNLIAGRSQASCTICHMQFSNRANARRHERNIHGIRISVQGAQTIIQQKDRPEISITTSTAAAPTAALKLKRPLDAPIIYDYTKPELYRTYLTEPRLNFIRRHLEFLEQYQTMTCKCCNKQFPTYKFFMAHMRKKYDTLSRNLCFKCLKQFQTKPQFIAHLKKRNCLNLYRVFMADDTISKEPLPNAPIRHGSKEIIANKTYGCRLCTETFRLKSDFRTHVVDTHSDAQKSEDAGNNACGYCNLEFEDGNERRRHFSNVECMVFLMCGTCEEKFNSHPEYIEHVYATHIPSANEAETPIKNEFLLDDENGLLPEDPTPSTQSKARSPQNCTVCGKQYNNYYNVLRHMESKHPDQVPTTYRCDRCKIGYPRQVELREHMLRVHNERLKFDAIKMKREQFSCRECKASFESKDSWLAHQLDDHSKFWCNQCDEECDKKEEFLTHLASHSEAKSFKCPVCQHSFSSERGFETHLSVVHNMTKEEVAESNLDNSDFGELPVECAVEINGEDDTDNDDINDADDLDGNDADIDETLEKPAKRIKLDLSATDNEITTPPNNETSLSTTCRICKQSFTTRIQLMQHMRSSHSSVSKLPSLTSSPHVAVQTHNVNNRLRCRICQKRIHTKNGYKRHMLTVHNVKDCVFIKCTLCPSEFSNDKGLKVHMFRTHNITVQQMQADESLVPIPKQESTSPTPSPIVPRTESKQMFECNICHTVYRSRDQLKSHRSIVHNITDGDLNETDLLESLAEENAFTGESWWQCRFCNESFNASKKLTIHMNSHSEYDNKETKCKDCGNVYGTRKSLWVHRQKKHPRLPNPSPCELCDKTFFDKTELFYHLKTHSNDDVFSHLQAMQEQLEAEQESRQKQEQSNDAQENFSCHICSQRFHDKRVLSKHLRVHEHQKQTETSFNNSALAAMLADTNISTEENLGEYSYPSYKGQMVENGEFACDMCPKKFSHVNALKVHRGWHFRSPDGRQITDSNSIWRPDVGSNNKNKRSRAANPPVCPFCNSTFASGNNLRRHIVEVHKRNEAKMMRENGVETTFIEKECECASCGITFNTRPEWVEHKISHARTMKPSTTYEWGCEICGKVFTRKERLLVHMTSHMNGGEEEINQRKAEMGFESNSQSSMSSLSQQQSNEATSLRKISGETKSSSSVSLLKQPSLLKQSLQGKTTPSIQNEVKLPLKTESVESLDLDYENSNSYEQEEEQNNSCGLCDLFFKSAKELKQHVKSHIESIGGQPEESNLDEYDEGDDEEEDGHDDGNGNSDIEDHYEIDEGVEGVEEEMGEEEADMVEEDFEDDDVDEDEHEERKPEISGFNCRLCGSSSESPQSMIKCMDNHNVKTSIQCEQCQLYFTNNNQLENHEMLCHPQEDYDEDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288415;
- 90% Identity
- -
- 80% Identity
- -