Cnas012233.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- lrrfip2
- Assembly
- GCA_009176525.2
- Location
- NW:820370-823846[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.091 1.3e+03 -1.9 1.6 28 75 59 103 8 129 0.63 2 3 4.6e-105 6.4e-101 337.2 31.7 1 299 154 444 154 445 0.92 3 3 0.012 1.6e+02 1.0 3.9 210 248 464 501 448 519 0.59
Sequence Information
- Coding Sequence
- ATGGATTTATCTTCGTCAAAATTATCGCActctgaaaatgaaaacaataacaacaataacagtaaATCTgattgtgaaaatgatgaagacTACATTCCTGATACTAATTTAGACGAACAAAAAGAGCTgtttgaaatcgattcaaGTGATCTCGATGATGGTTCAGATTCAGATCAAGAACAAGACGAAAACATTgggaaaaatattgtttcggaacatgaaaatcattgcaatcagaaattaaatttacacaGTGAAACAGTCAACACTATTCCAaccatacaaacaaaatgtcattccAATGAAACACACATTGACAGCCATAACATACtaaatgaaaacgattcaTCAACGATGGCAATTAACTGTTTACATGATAAAGAAACACTTGATACAAACGATGATAATGCCGAAGAGGATGAACCGATCTTCGATTTTTTGGGCAAAGCCAACGAAATCGCCGAAGCACGTTTGGCACAGCGAAGACTTGCCCGGGCAGAAGCGCGTGACATTCGCATGCGTGAACTTGAACGCCAACAGAAAGAACAGGAACAAAATGCAGATCGAGCTTTTGATATGCAAACAGCAGCTGGTTTAGATCCAACAGCGCGATCTACACGTTTTACAATGTCTTCGGGTGCATTGGGTGCATTGGGTGCATTACGTAGTGGAACAATGTCATCACGTCGCAGTAGTGAAGATTCATTAGAAGAAGAAGGTCGTAGTCTTCGCGATataaaacaagaaataaagGATTTAGAAGAACGGTATAGAAAAGCAATGATAGCTAATGCTCAATTGGACAATGAACGCGCATCGAATacatatcaaattcaattgttgaaaGACAAAGTGGAGGATATGGATGAGATACATGCACAACTGCATCGTGagcacaaagaaaaatgtcgaGAATTCGATACAttaaaacgaacaaatgaaaaacttatGGAAGACTTAAGATTAGTTCAAGGTCAACTACACGAGCGTGACTTCTTAATTGCAAATGAAGGTCTGACAAtagtttcaattgaaaatgaagacgGTTCGGATGCAAAGCGGGCTCTAGTCAGTGCAGAAAATGCTCAATTATTAGACACTCATCAAGGCTCTTTAGaTGTACGGTTGAAAAAATTCACTGAAGAGAAACAAGCCTTAAGAACTGAAATTGAGCAGCTCCATCAACAATTAATTAGTGCGAAAACACAAAGGCGATCTGGATCACAAAACGGGCCAATCGATGATGAAGACTATGAAGATGCACaaagagaagcaaataaattaattgcaGACTATAAGTATAAGTTGACAAAAGCAGAACAGGAAATAGCTAGTTTACAAGCAAGCCTAGCACGTTCTGAGACTCAAGTTATTCGATACAAGAGCACAGCAGACGCCGCTGAAAAAGTTGAGgccgaattgaaaattgagcGACGAAAACTTCAGCGAGAgAACCGCgaaatgatggaaaaactTGAGGAGCTGGAAACATCTCATAATCACTTGCTGAAACGTTTAGATAAactgaaaaatgcaaagagCACATTGCTTAAAGAATTATGA
- Protein Sequence
- MDLSSSKLSHSENENNNNNNSKSDCENDEDYIPDTNLDEQKELFEIDSSDLDDGSDSDQEQDENIGKNIVSEHENHCNQKLNLHSETVNTIPTIQTKCHSNETHIDSHNILNENDSSTMAINCLHDKETLDTNDDNAEEDEPIFDFLGKANEIAEARLAQRRLARAEARDIRMRELERQQKEQEQNADRAFDMQTAAGLDPTARSTRFTMSSGALGALGALRSGTMSSRRSSEDSLEEEGRSLRDIKQEIKDLEERYRKAMIANAQLDNERASNTYQIQLLKDKVEDMDEIHAQLHREHKEKCREFDTLKRTNEKLMEDLRLVQGQLHERDFLIANEGLTIVSIENEDGSDAKRALVSAENAQLLDTHQGSLDVRLKKFTEEKQALRTEIEQLHQQLISAKTQRRSGSQNGPIDDEDYEDAQREANKLIADYKYKLTKAEQEIASLQASLARSETQVIRYKSTADAAEKVEAELKIERRKLQRENREMMEKLEELETSHNHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288131;
- 90% Identity
- -
- 80% Identity
- -