Cnas005329.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- PAX6
- Assembly
- GCA_009176525.2
- Location
- NW:7851899-7881040[-]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-35 4.7e-32 110.2 0.0 23 125 83 180 67 180 0.94 2 2 2.7 4.7e+03 -2.9 0.0 75 92 355 372 345 374 0.82
Sequence Information
- Coding Sequence
- ATGTTGATTGGATCAAATTTGAATAGTGATTTTGGACCATTGCCAAGTGCCCCTTGGAATATGGAACCACCGAGATTACCACTCGCCACTGGCGGCGGCTCATTGCCACAATCAACCAACATACAATTGTCACCAACcgCAGTTAGTTTAAGTCAAAATGTACCCGGTGCAGCAACCGCTTCCGTATCGCCAGCATCTGTGTTCAGTGGTGGTGCATCACCGTCAACGTTAAGCGCTCTCGTATCTCAGCATCGGTTACTTGAATTGTCACGATTCGGTTTGCGAGGTTATGACTTGGCCCAACATATGCTCACACAACAAGGAGCTGTTTCCAAATTGCTAGGTACGCTTCGTCCACCCGGTTTGATTGGTGGTTCTAAACCAAAAGTTGCAACGCCGGCCGTTGTATCGAAAATTGAACAGTATAAACGGGAGAATCCAACGATATTTGCGTGGGAAATCCGAGAACGGCTCATTTCTGAAGGGGTTTGTACAAATGCAACAGCACCATCAGTATCCTCAATAAATCGCATCCTCAGAAATCGAGCCGCCGAACGTGCAGCTGCTGAATTTGCAAGAGCCGCCGGCTATGGTCTTTATCCTCCCACACCGTACAGCAGTTTTCCATGGCCAGCGACGGCAGCACACTTATGGTCGGCTGGCAGCGGTTTTCCGGGCATTTCACCTGGATCGGCCACAACTTCGGGTACAGCATGTTCACCAGGATCTGGAAGTCATGATACTCTTGGATCACCCGATGGAAATCGACTGATTGATGTTGAAGGTGAAGATTCGGGCAGTTTAGATGGTGAGCAGCCGAAATTCCGACGAAATCGAACGACATTTAGTCCAGAGCAATTGGAGGAATTGGAAAAAGAATTTGATAAATCGCACTATCCATGCGTTAGCACTAGAGAACGTTTGGCATCGAGGACTTCATTAAGTGAGGCTAGAGTACAGGTTTGGTTTTCCAACAGAAGGGCAAAATGGAGACGCCATCAGCGTATGAACATGCTCAAGCAACGTTCGTCGCCAACACAACGAAGCACTTCAAGTTACACCCCTACTTCCCCCGAACTACAGAGGCGCACGGAAGCTTATGCACAACAAACACCACCATCAGCTCAGCAACAGCCGACTTCAAAATGCTCCAGcAACAATCCACATCAGGGATCGCATCAACACACAACAAATCAACTAAATGTAACCGGATCAGTCACAGCATCAGCTCCATTATTAATGGGGGGCGAACATAGTGCATTTCGATCGCTTGTACCTTCAGCTTCAGCTGCCGCACTGTTAGCAGCATCAGCGCAATTAGGTCTAACCAGACCATATAATCATTCACCGCATGTTATGAGCGATGAATCTGATGAAGAAATTAATGTTCATGATGATGAATCGGACAACGATTCAAATTATAATCCACGCAGTAAAACAACCagcagcaataacaacaacgagaTGATTTCGAATAAGATCTCGGTTGCCGGTGGTgagaattaa
- Protein Sequence
- MLIGSNLNSDFGPLPSAPWNMEPPRLPLATGGGSLPQSTNIQLSPTAVSLSQNVPGAATASVSPASVFSGGASPSTLSALVSQHRLLELSRFGLRGYDLAQHMLTQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGVCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGLYPPTPYSSFPWPATAAHLWSAGSGFPGISPGSATTSGTACSPGSGSHDTLGSPDGNRLIDVEGEDSGSLDGEQPKFRRNRTTFSPEQLEELEKEFDKSHYPCVSTRERLASRTSLSEARVQVWFSNRRAKWRRHQRMNMLKQRSSPTQRSTSSYTPTSPELQRRTEAYAQQTPPSAQQQPTSKCSSNNPHQGSHQHTTNQLNVTGSVTASAPLLMGGEHSAFRSLVPSASAAALLAASAQLGLTRPYNHSPHVMSDESDEEINVHDDESDNDSNYNPRSKTTSSNNNNEMISNKISVAGGEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00285248;
- 90% Identity
- iTF_00133199;
- 80% Identity
- iTF_00367048;