Cnas000607.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- Rel
- Assembly
- GCA_009176525.2
- Location
- NW:3790845-3796770[-]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-41 1.2e-37 129.1 0.0 1 168 99 281 99 282 0.92 2 2 3.1 6.2e+03 -3.4 0.0 38 62 780 805 765 863 0.53
Sequence Information
- Coding Sequence
- ATGTCTGTATTTCATAACCTGGAGCCATATCATCACGATTATTACTTAAATTCGCCGTCATTGCTATCGTCACCATCGTCAGTCAGTTCAATGAATACAGAtggaaatattcatttgtacGGTAGCACAATGAGCTCACCGATGTCAGGCAATATGTCACCAATATCGAACAGTATGTCACCGGTTTCGTCGAGTGATAGCAGCAGTGCATATCATTTTCAACAGTTGCAAATATCATCGAATGCCAATGAATACTTTGTGAATACGATGAACACAAAAATGGATGAACCATTTTTAGAGATAATGGAACAGCCCATCGATAAGTTTCGGTTTCGTTATAAATCCGAAATGCATGGAACTCATGGTATGCTCACCGGAcaacattcgaaaaaaacatttccagCCGTTCGTCTACGTAATTTCACCGGTGAAGCATTGATACGATGCTCATTGTATCAGATTTGGAAACCGGGCCATGAACTACCGTTTCCCCATTCGCACAGTCTGGTCGTTCGTTGTGGTAACGATGATAAAAAAGATCCACACGAAGCGATGGTATCACAATTACATGGATACAAAGCAACATTTCAAGGAATGGGAATCATACATACGGCACGAAAGCACATTGAAGACGAATTATATGATAAATTGGTGGGTCGGGCTGAATTCGAAAAGGGATGTGATCTAACCAAACCCGAAAAGGATCTGTTACgatcaaaagcaaaaaaacattccaatgatatgaatttgaatcagGTGTCATTGTGTTTCGAAGCATATGAACGTGTTAATGGTAAATGGATGCGATTGTGTGAACCTATTTTTTCAACGCCCATAAACAATTTAAAAAGTGCATTGACGggagaattgaaaataagtcGCATGAGTTCGGTCATTGGAAGTGCAGCTGGAAATGATGACCTTTTCATATTTGTCGAAAAAGTTGGAAAAAaaaatataaAGGTTCGATTTTTTGAACAAGATGACGATCAAATCATTTGGGAAGATTGGGGAAAATTCACGGAAGCCGATGTTCATCATCAATATGCGATCGCATTAAAAACACCACCATATCGTGAAGTCAGCATTGATGAAAGTGTAAAAGTTTATATTCAACTGTATCGACCGGGTGATGAAGCCATTAGTGAACCAGTTGAATTTCGATACAAACCATGTgtcaacttcaatttaaatatgaatcgAAAACGACCACGAGTTGCCTCTTTTTACGATTCCGACATACCAGTGGTCGTGGcagaaaatgcatttgttCGCAATCCGTCGGACAGTTATGTGCCACAAATGGATAATACGAGCAATGACACTGACATCGATCAAATAATATCCGATCTTTTCAGCAACAGTCCAAATGAACTTCTTGATCCAGAAGAATTCACCTCACTACTGCAACAATTGAATGAGAATCCAAATTGTGCGAGCAGCGAAGAAAATTCCGAATTTGATAAGCTTGCAAAAGATTCGGTCAGCATTGATGACGATCATTCAAATGCATCATTATCAAAAGAAGAGAAATGGATTGCACAATTTCTCAACAAAATTAATCCATTGATTAAGGGCCACAATGTCACCAATTCAAGAGTTTGTCGAAAATTCTTCGAATTTATATTCCAAAGGGTTCTTTTCAATGGCAATAACATTATGCACATTTGTGCAAAAAGTGATGATCTCaagcaaatgaattgtatttgGGAAATTATACATAAATTCCAATTATACGATTTGTTGGACATACGAAATTACAATAAAGAAACTTGTGCACATTTCGCTAGcgcaatgaataaaacaagtgTACTTGAAGAGCTCATCAAATATGGCATCGATTTGAATGCCGTCGATGCGGATGGTAATACAGCTCTGCATATTGCAattcgtgaaaaaaatgacgattGTGTTGCGGTCATCATGAATAGCAGCTCAAACAAATGGGGAAAAGAGGTCGAAATTAATTTGAGTATACTAAATGATTCCGGTTTTACACCGTTGCACATGGCATCGATGACAAATAATGTGAACATTGTTAAAATGTTAGACGTAAAATCggcacaaatgaaaaaaccaaTATTCGATGATGTAGAGGGAAAGCATGGAAATAATGCGCTACATATTGCAATCGAATCGGACGCTCACAATGTGGCCGAatatttaatacaaaataaatgcataaatcCATCGAAAGTAAACAAATCCAATCATACGGCATTGTACTTGGCACGCGTGGCGAATTCAATGGATTTGGTAAATTTGATGCAACGATATATTTCAGTCGATAACGAACAGTCGatggatgatgatgacgacgcaAGCTCAAAAGATTCGTTTGAATcacaagaaataaacaaaacaacgacTGAGGCCAAGCAAACGAGCGTTATCGTTAAAACTGAATCATGCAAATTGCAAGAGAGACAAGATGCAAAGAAATTTGATAAACAATGTCTTGATGAACTGTGCGTTATATTTAACAAGAATGATAAATGGAAATCGATTGCGATGATTTTGGGCTATCAAGACTGCGTGGAATCATGGCAAAAATCTCGAAATCCAACCAGAATTCTACTCACCTATGCAGAGTCGTTGAAAGTGTCCAAAGAAACTATCGTTGATATTTGTGTGCAACttggtgaaaaaaatgccGTGAATTGTATAGATGAATGGAAAAAGGGGGTTTAA
- Protein Sequence
- MSVFHNLEPYHHDYYLNSPSLLSSPSSVSSMNTDGNIHLYGSTMSSPMSGNMSPISNSMSPVSSSDSSSAYHFQQLQISSNANEYFVNTMNTKMDEPFLEIMEQPIDKFRFRYKSEMHGTHGMLTGQHSKKTFPAVRLRNFTGEALIRCSLYQIWKPGHELPFPHSHSLVVRCGNDDKKDPHEAMVSQLHGYKATFQGMGIIHTARKHIEDELYDKLVGRAEFEKGCDLTKPEKDLLRSKAKKHSNDMNLNQVSLCFEAYERVNGKWMRLCEPIFSTPINNLKSALTGELKISRMSSVIGSAAGNDDLFIFVEKVGKKNIKVRFFEQDDDQIIWEDWGKFTEADVHHQYAIALKTPPYREVSIDESVKVYIQLYRPGDEAISEPVEFRYKPCVNFNLNMNRKRPRVASFYDSDIPVVVAENAFVRNPSDSYVPQMDNTSNDTDIDQIISDLFSNSPNELLDPEEFTSLLQQLNENPNCASSEENSEFDKLAKDSVSIDDDHSNASLSKEEKWIAQFLNKINPLIKGHNVTNSRVCRKFFEFIFQRVLFNGNNIMHICAKSDDLKQMNCIWEIIHKFQLYDLLDIRNYNKETCAHFASAMNKTSVLEELIKYGIDLNAVDADGNTALHIAIREKNDDCVAVIMNSSSNKWGKEVEINLSILNDSGFTPLHMASMTNNVNIVKMLDVKSAQMKKPIFDDVEGKHGNNALHIAIESDAHNVAEYLIQNKCINPSKVNKSNHTALYLARVANSMDLVNLMQRYISVDNEQSMDDDDDASSKDSFESQEINKTTTEAKQTSVIVKTESCKLQERQDAKKFDKQCLDELCVIFNKNDKWKSIAMILGYQDCVESWQKSRNPTRILLTYAESLKVSKETIVDICVQLGEKNAVNCIDEWKKGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -