Cnas005847.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Contarinia nasturtii
Gene Symbol
dl
Assembly
GCA_009176525.2
Location
NW:5867738-5870222[-]

Transcription Factor Domain

TF Family
RHD
Domain
RHD domain
PFAM
PF00554
TF Group
Beta-Scaffold Factors
Description
Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.4e-42 4.7e-39 133.7 0.2 1 169 6 181 6 181 0.92
2 3 1.2 2.4e+03 -2.0 0.5 99 124 300 329 288 370 0.62
3 3 7 1.4e+04 -8.5 6.4 117 121 453 457 438 471 0.35

Sequence Information

Coding Sequence
atggaCAAATCATACGTGAGAATAAAGGAAGAACCAGCGGAAAAGTCGTTTCGATTTCGGTATGAATCGGAAGGGCGATGGAGCGGTTCAATTCATGGTGAGAATTCAACACACGACAAAACCACCTATCCATCAATCGAAATAAGCAATTGCACTGGTTTTGTGGCCATATGTATATCTTGTGTTACAAACGAAATACGACCAAAACAACATCCGCATAAGCTGGCAACGAAATCATTGTCAAATACCGGTGAAATATGGCGAAGTGTAAAAATCGAAGCATCAAAAGTGGTCGAATTCAAAGATCTTTGCGTTATATTTGTGAAGAAGCAAGATATTAAGAAATCATTGGAGCTACGACGACGACAAAATATTGATCCGACAAAAGgTGGATGGGATCAAATGATGAAGCCGCACTTGATTGATTTGCATTGTGTTCGTTTATGTTTTGAAGTGTTGCTTTCGAAGACTGGTTCGTATTcggaaaatcgaaatgattggAAGAGTTTGGGGCACGTCATTTCGAAACCGATTTTagacaaaaaaagcaatggCCTACTGAAAATTACCGAAATAAGCTCGCAAAAAGCACCAGTCACCGGTGgtaaacaaatcattttattatgcGATAAAGTAAAACGTGAAGATATTTCGGTTGTATTTTATGAAGAAGATGCCGATCGCAATCAGATTTGGCGAGAAGAAATTCAGTACAAAAATTCAACGACGATGAAAGTACATCATCAATATGCAATCTCTTTTAAGACGCCAAGATATGATAGATTTGATTTTGGAGGCACACGCAGAACATTCATTCAACTATGTCGACCGTCGGATGGGGCATGCAGTGatccaattgcatttgaattcaCTCAGGTCGCACAAAGTATTCAATTGCGTCgcaaaaaacagaagaaaatgaGCGAAGAGCTATCGAAGGAGTTATTAAAATCTAtcacaaaaacgaaaaaaccagaaaaaacaaaatgtggcCAAGTTGATAACGCCTTAATGGACACGAACCGAAACAATGCTGTTGAACGTATGATACCCCAGACACTCATTGATTTAGttgaaaacgaaaaagagaatattCATGTTAATATACCGATGAACAATCAAACACATGTACAAGCGCAAAATATCTATCAAGGATCAGTGCAAATGAATCAGTTTCAGCAACCGATTGTAAATACAAACTTATATGAGGGACAAtgtaataattatttaaattcatatggATATTTTGGTGAGCCATCaaatttacaaacaacatACAATCATGGTCGTAATACTTTACCTACCATGTATccacaacaacatcaacaacagcagctacatcatcaacatcaacaccaccaccaccaccaacaacaacaacaacaccaacaacaccACGAACACCAGCATCCGCAACCATTTGGAAATATTTATCCAAATGGGCACGATTATATGGATCGTTTTACCGTGATGCCTACTCAAACATCTACCGTGCACACATTGAATCCGGACAAAAACTATATGCCTTCAACCtataataatacaaataatatttcatctAACAAACCGATTGAATGTCCTGTAAATAATACACAAGGAATGAATCAAAATTCCACATTATCCGAATTACTCGCGGACAACTCTCTCCTGAATTTAGACTCATCGGTAATGAAAATGTTGGATGTCGGCGAAATCAATGATATTACAAATAGTTTGGAAATTATCACACTAAATGGAAATGATTGA
Protein Sequence
MDKSYVRIKEEPAEKSFRFRYESEGRWSGSIHGENSTHDKTTYPSIEISNCTGFVAICISCVTNEIRPKQHPHKLATKSLSNTGEIWRSVKIEASKVVEFKDLCVIFVKKQDIKKSLELRRRQNIDPTKGGWDQMMKPHLIDLHCVRLCFEVLLSKTGSYSENRNDWKSLGHVISKPILDKKSNGLLKITEISSQKAPVTGGKQIILLCDKVKREDISVVFYEEDADRNQIWREEIQYKNSTTMKVHHQYAISFKTPRYDRFDFGGTRRTFIQLCRPSDGACSDPIAFEFTQVAQSIQLRRKKQKKMSEELSKELLKSITKTKKPEKTKCGQVDNALMDTNRNNAVERMIPQTLIDLVENEKENIHVNIPMNNQTHVQAQNIYQGSVQMNQFQQPIVNTNLYEGQCNNYLNSYGYFGEPSNLQTTYNHGRNTLPTMYPQQHQQQQLHHQHQHHHHHQQQQQHQQHHEHQHPQPFGNIYPNGHDYMDRFTVMPTQTSTVHTLNPDKNYMPSTYNNTNNISSNKPIECPVNNTQGMNQNSTLSELLADNSLLNLDSSVMKMLDVGEINDITNSLEIITLNGND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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